Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0575
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    91   9e-20
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    28   1.3  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   3.9  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   3.9  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 91.5 bits (217), Expect = 9e-20
 Identities = 40/70 (57%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
 Frame = +2

Query: 56  KTNLGVYDGPEARFCPAGVYEFVPLEEGD-GQRLQINAQNCIHCKTCDIKDPSQNINWVV 232
           K+    Y G E +FCPAGVYE+V  E    G+R  IN+QNC+HCKTCDIKDP Q I W  
Sbjct: 561 KSCFETYKGVENKFCPAGVYEYVNDEASSYGKRFVINSQNCVHCKTCDIKDPLQGIQWKT 620

Query: 233 PEGGGGPATT 262
           P+GG GP  T
Sbjct: 621 PQGGDGPKYT 630


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 621 KNKLNIKYNSYTISHTNRSDILTYICQC 538
           KN+  + +N + +SH    D++ Y+ +C
Sbjct: 118 KNRYGLIWNQWCLSHLTDEDLIAYLSRC 145


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 194 DIKDPSQNINWVVPEGGGGPATTXCKLIPNI 286
           +I D ++NIN+  PE G  P+ T     P +
Sbjct: 147 EINDSTKNINYKAPEMGSLPSNTEFTSTPTL 177


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 122 RTRIHLQDKTWLRVHRILLDWS*PAPYRLLTSDAEAGP 9
           +T I +QD T  R++    DWS     R+ + + + GP
Sbjct: 467 KTAIRIQDSTGKRINNYAFDWS-----RMTSFEGDTGP 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,932
Number of Sequences: 5004
Number of extensions: 45034
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)