Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0575
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904...   134   6e-32
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303...    28   7.1  
06_02_0352 + 15083174-15083433,15083973-15084108                       27   9.4  
02_02_0405 + 9885202-9885415,9885515-9885861,9885941-9886516,988...    27   9.4  

>10_08_0628 +
           19389508-19389637,19389774-19389850,19390332-19390438,
           19390545-19390626,19390702-19390814,19391023-19391086,
           19391192-19391266,19391691-19391807,19392131-19392199,
           19392319-19392411,19392733-19392835,19393040-19393164,
           19393317-19393366,19393477-19393543,19393663-19393742,
           19394038-19394166,19394274-19394340,19394429-19394512
          Length = 543

 Score =  134 bits (324), Expect = 6e-32
 Identities = 57/84 (67%), Positives = 66/84 (78%)
 Frame = +2

Query: 11  DQPPHLTLKDDTVPVKTNLGVYDGPEARFCPAGVYEFVPLEEGDGQRLQINAQNCIHCKT 190
           DQPPHL L+D TVP + NL +Y GPE+ +CPA VYE+V  E+GD Q+L INAQNC+HCK 
Sbjct: 459 DQPPHLRLRDPTVPERVNLPLYAGPESHYCPARVYEYVTDEKGD-QKLHINAQNCLHCKA 517

Query: 191 CDIKDPSQNINWVVPEGGGGPATT 262
           CDIKDP QNI W VPEGGGGP  T
Sbjct: 518 CDIKDPKQNIEWTVPEGGGGPGYT 541


>02_03_0138 -
           15629421-15629440,15629521-15629752,15630115-15630348,
           15630486-15630709,15631225-15631509,15631549-15631690
          Length = 378

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 225 GLCPRAAADLLQRXVN*YQIFIKPVXIKQEQHND 326
           G+ P+AA +L  R V  +Q F+ P+  K+E   +
Sbjct: 128 GIRPKAAHELATRQVECWQAFLSPMKGKEEDEGE 161


>06_02_0352 + 15083174-15083433,15083973-15084108
          Length = 131

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 138 PSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSLVP 1
           P S G       G++L    S    L+LTGT++     CGG ++VP
Sbjct: 16  PGSLGEGWSCYLGKSLVK-ESDLAELILTGTLAEGQATCGGEAVVP 60


>02_02_0405 +
           9885202-9885415,9885515-9885861,9885941-9886516,
           9886599-9887003
          Length = 513

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 397 LKRHVLLENSSKIFNSEEHDCGSLTMQTI*LKKPH 501
           L+RH L +NS++      HD  S +  T  + +PH
Sbjct: 5   LRRHSLDKNSAQFHRQLSHDSSSSSSDTADMHEPH 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,610
Number of Sequences: 37544
Number of extensions: 341190
Number of successful extensions: 833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)