Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0575
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   2e-44
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     30   1.8  
SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)                    28   5.5  
SB_33009| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)                  28   5.5  

>SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score =  175 bits (426), Expect = 2e-44
 Identities = 73/82 (89%), Positives = 79/82 (96%)
 Frame = +2

Query: 11  DQPPHLTLKDDTVPVKTNLGVYDGPEARFCPAGVYEFVPLEEGDGQRLQINAQNCIHCKT 190
           DQPPHLTL+DDTVPVK NLGV+DGPE RFCPAGVYE+VPLE+G+G RLQINAQNC+HCKT
Sbjct: 165 DQPPHLTLRDDTVPVKRNLGVFDGPEQRFCPAGVYEYVPLEKGNGMRLQINAQNCVHCKT 224

Query: 191 CDIKDPSQNINWVVPEGGGGPA 256
           CDIKDPSQNINWVVPEGGGGPA
Sbjct: 225 CDIKDPSQNINWVVPEGGGGPA 246


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -1

Query: 144 PSPSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVS 40
           P+PS   T SYTP   +  S  SYTP    T T S
Sbjct: 76  PTPSYTPTTSYTPT-PSYTSTTSYTPTTSYTSTTS 109



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 144 PSPSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVS 40
           P+PS   T SYTP   +    PSYT     T T S
Sbjct: 124 PTPSYTSTTSYTPT-TSYTPTPSYTSTTSYTSTTS 157



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -1

Query: 144 PSPSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVS 40
           P+PS   T SYTP   +  S  SYTP    T T S
Sbjct: 88  PTPSYTSTTSYTPT-TSYTSTTSYTPTPSYTPTPS 121



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -1

Query: 144 PSPSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVS 40
           P+PS   T SYTP   +  S  SYTP    T T S
Sbjct: 112 PTPSYTPTPSYTPT-PSYTSTTSYTPTTSYTPTPS 145


>SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)
          Length = 533

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +3

Query: 42  IRCRLRPI*EYTMDPKPGFVLQVYTSSYRWRRVMVRGCRSMLRTASTVKRATLKTRRRTS 221
           + CR+RP    +++P+  FV +  T   +     + G +++    ST  +A L+ ++R +
Sbjct: 348 LTCRVRPAHPSSLNPRITFVFRDKTLKLKPATSTLGGPKAIKGNVSTRTKAALQPKQRIT 407

Query: 222 TGLCPRAAA 248
           +    +A A
Sbjct: 408 SKAVSKAVA 416


>SB_33009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 167 QNCIHCKTCDIKDPSQNINWVVPEGGGGPATTXCKLIPNIH*TRXNQAR 313
           +N  HC++CD+        + V  GG  P  T  + +P I  T  +  R
Sbjct: 133 KNETHCRSCDLTHCDLGFGFSVRCGGTYPTDTRVECVPCIAGTNFSNVR 181


>SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)
          Length = 327

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 167 QNCIHCKTCDIKDPSQNINWVVPEGGGGPATTXCKLIPNIH*TRXNQAR 313
           +N  HC++CD+        + V  GG  P  T  + +P I  T  +  R
Sbjct: 33  KNETHCRSCDLTHCDLGFGFSVRCGGTYPTDTRVECVPCIAGTNFSNVR 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,364,587
Number of Sequences: 59808
Number of extensions: 377914
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)