Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0575
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein...   151   5e-37
U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead transc...    29   2.8  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein
           721 protein.
          Length = 597

 Score =  151 bits (365), Expect = 5e-37
 Identities = 66/84 (78%), Positives = 70/84 (83%), Gaps = 1/84 (1%)
 Frame = +2

Query: 5   TRDQPPHLTLKDDTVPVKTNLGVYDGPEARFCPAGVYEFVPLEEGDGQ-RLQINAQNCIH 181
           T DQP HLTLK+D VP+  NL VY GPEARFCPAGVYEFVP E  + + RLQINAQNCIH
Sbjct: 509 TEDQPAHLTLKNDQVPLDVNLAVYGGPEARFCPAGVYEFVPSEADESKKRLQINAQNCIH 568

Query: 182 CKTCDIKDPSQNINWVVPEGGGGP 253
           CKTCDIKDP QNINWV PEGGGGP
Sbjct: 569 CKTCDIKDPQQNINWVTPEGGGGP 592


>U80840-6|AAB37934.1|  317|Caenorhabditis elegans Hypothetical
           protein F08D12.11 protein.
          Length = 317

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 214 LRRVFNVARFTVDAVLSIDLQPLTITLLQRYELVYTCRTKPGFGSIV 74
           L  V N   +T+ A L+ D+Q + I   +  EL  T  T P  GSI+
Sbjct: 265 LEAVLNDIDYTISAELAEDIQTVVIPRYRLSELFLTYTTPPNMGSIL 311


>U41268-3|AAA82436.1|  270|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 2, isoform a protein.
          Length = 270

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 98  CPAGVYEFVPLEEGDGQRLQINAQNCIHCKTCDIKDPSQNIN 223
           CP  V E V +E+     L I+ Q CI  ++ DI DPS +I+
Sbjct: 10  CPDLVEEAVKIEQ-----LHISTQPCIKQESTDISDPSTSID 46


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 138 PSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVS 40
           P+S    S T  G +  S  SYTPR V  G+VS
Sbjct: 57  PTSYRAGSITSGGNSSNSTSSYTPRNVRAGSVS 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,584,637
Number of Sequences: 27780
Number of extensions: 283643
Number of successful extensions: 757
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)