Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0575
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.46 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.9  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 192 HVLQWMQF*ALICNL*PSPSSNGTNSYTPAGQNLASGPSYTPRLVL 55
           HV    Q+ +++     SP  NG  +Y+   +NLA+  S+T RLV+
Sbjct: 659 HVTNMDQYNSILMIEHLSPDHNG--NYSCVARNLAAEVSHTQRLVV 702


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 149 RLQINAQNCIHCKTCDIKDPSQNINWVVPEG 241
           R+ I     +  +  DIK+ S  IN+ +P+G
Sbjct: 501 RMSILVATAVAARGLDIKNVSHVINYDLPKG 531


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 126 GTNSYTPAGQNLASGPSYTPRLVLTGTVSSFNVRCGGW 13
           G N Y P G   A G  Y  R +L+   +S+ V  G W
Sbjct: 189 GWNRYVPEGNMTACGTDYFNRGLLS---ASYLVCYGIW 223


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 126 GTNSYTPAGQNLASGPSYTPRLVLTGTVSSFNVRCGGW 13
           G N Y P G   A G  Y  R +L+   +S+ V  G W
Sbjct: 65  GWNRYVPEGNMTACGTDYFNRGLLS---ASYLVCYGIW 99


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 516 NNCHCQVDTDK 548
           NN HC  DT+K
Sbjct: 64  NNHHCNQDTEK 74


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 146 DHHPPPTVRTRIH 108
           DH P  TVR ++H
Sbjct: 282 DHAPKQTVRFKVH 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,264
Number of Sequences: 438
Number of extensions: 3816
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)