Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0575
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino...   124   4e-29
At1g03390.1 68414.m00319 transferase family protein similar to a...    32   0.28 
At4g04920.1 68417.m00715 expressed protein                             30   1.5  
At2g30900.1 68415.m03766 expressed protein                             30   1.5  
At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) l...    29   1.9  
At5g63470.1 68418.m07968 CCAAT-box binding transcription factor ...    29   3.4  
At3g60300.1 68416.m06740 RWD domain-containing protein contains ...    28   5.9  
At1g04490.1 68414.m00440 expressed protein                             27   7.8  

>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
           oxidoreductase family protein contains Pfam profile:
           PF05187 Electron transfer flavoprotein-ubiquinone 
           oxidoreductase
          Length = 633

 Score =  124 bits (300), Expect = 4e-29
 Identities = 53/82 (64%), Positives = 61/82 (74%)
 Frame = +2

Query: 11  DQPPHLTLKDDTVPVKTNLGVYDGPEARFCPAGVYEFVPLEEGDGQRLQINAQNCIHCKT 190
           DQP HL L+D  +P K N   Y  PE+R+CPA VYE++  EEG   +LQINAQNC+HCK 
Sbjct: 549 DQPSHLRLRDPKIPEKVNFPEYAAPESRYCPARVYEYIEDEEGK-PKLQINAQNCLHCKA 607

Query: 191 CDIKDPSQNINWVVPEGGGGPA 256
           CDIKDP QNI W VPEGGGGPA
Sbjct: 608 CDIKDPKQNIEWTVPEGGGGPA 629


>At1g03390.1 68414.m00319 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase from
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 461

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 554 RTFVSVNLTVTVVRLKLK*GFFNQIVCMVSEPQSCSSLLKIFDEFSRST 408
           R   SVN+   +  LKL+ GF+  +VC+     S  SL+   D  S++T
Sbjct: 303 RLTFSVNVRTRLETLKLRKGFYGNVVCLACAMSSVESLIN--DSLSKTT 349


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/76 (31%), Positives = 36/76 (47%)
 Frame = -1

Query: 273  NLHXVVAGPPPPSGTTQLMFCDGSLMSHVLQWMQF*ALICNL*PSPSSNGTNSYTPAGQN 94
            +L+  V  P   + TT      GS  SHV  WMQ    I  +  S S++G+NS       
Sbjct: 869  SLYLAVGQPTTTTTTTATTNSSGS--SHVQAWMQ--GAIAKI--SSSNDGSNS---TASP 919

Query: 93   LASGPSYTPRLVLTGT 46
            ++  P++ P  + TGT
Sbjct: 920  ISGSPTFMPISINTGT 935


>At2g30900.1 68415.m03766 expressed protein
          Length = 367

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -1

Query: 225 QLMFCDGSLMSHVLQWMQF*ALICNL*PSPSSNGTNSYTPAGQNLASGPSYTPRLVLT 52
           +LMF   SL  +  QW     L+ N   +P +N T++ +P+G ++ S P+Y   ++ +
Sbjct: 111 KLMFVGDSLSLN--QWQSLTCLLHNA--APKANSTSTRSPSGLSVFSFPAYNSSIMFS 164


>At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) low
           similarity to huntingtin interacting protein 1 [Homo
           sapiens] GI:12697196; contains Pfam profile PF00856: SET
           domain; identical to cDNA ASH1-like protein 3 (ASHH3)
           partial cds GI:15488419
          Length = 363

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 516 NNCHCQVDTDKCTSKCHCG 572
           +NCHC +    C+S C CG
Sbjct: 84  SNCHCGMLFSSCSSSCKCG 102


>At5g63470.1 68418.m07968 CCAAT-box binding transcription factor
           Hap5a, putative
          Length = 250

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 249 PPPPSGTTQLMFCDGSLMSHVLQWMQ 172
           PPPPSG+  ++   G+   H+LQ  Q
Sbjct: 29  PPPPSGSASIVTGGGATYHHLLQQQQ 54


>At3g60300.1 68416.m06740 RWD domain-containing protein contains
           weak similarity to RING finger protein 25 (RING finger
           protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
          Length = 366

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 65  LGVYDGPEARFCPAGVYEFVPLEEGDGQRLQINAQNCIHCKTCD 196
           L + + PE   CP  +Y   P + G  Q   +   +C HC  C+
Sbjct: 111 LTIMNHPEGD-CPLCLYPLFPEDGGSKQMPFMKLMSCFHCFHCE 153


>At1g04490.1 68414.m00440 expressed protein 
          Length = 401

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 141 SPSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVSSFNVRCGGWSL 7
           S SS   N   P+G  +  GP   P  ++    S  N  CGGW L
Sbjct: 284 STSSISMNVVIPSG--IHGGPEDGPSSLIERWKSQGNCDCGGWDL 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,540,202
Number of Sequences: 28952
Number of extensions: 251899
Number of successful extensions: 585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)