Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0570
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.4  
08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138     30   1.8  
03_05_1051 + 29978655-29979875                                         29   3.2  
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056     29   3.2  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   9.7  
01_05_0579 + 23393632-23393734,23393765-23394513,23395958-233963...    27   9.7  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 565 ITIHWPSFYNVV-TGKTLALPNLIALQH 645
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>08_02_0679 + 20006105-20006488,20006615-20006848,20007929-20008138
          Length = 275

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 305 PQPPSPPERLWTSELATILR 364
           P PP PP+  W S  AT+LR
Sbjct: 10  PPPPPPPQARWASVAATLLR 29


>03_05_1051 + 29978655-29979875
          Length = 406

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -2

Query: 286 NSRFKTTP*IFLNDKXSRPPARCGPRTST 200
           N RFK     FL D+  RP ARCGP + T
Sbjct: 181 NGRFKDAR--FLLDQMERPGARCGPDSYT 207


>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
          Length = 530

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 19  KRVCIHRSRRGVAAGDDDR*NIRTSSVVKLQL 114
           +++CI +SR G AA DDD  N + S V  L +
Sbjct: 466 EKICIFQSRHG-AAPDDDELNAKLSMVASLNI 496


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 577 WPSFYNVV-TGKTLALPNLIALQH 645
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>01_05_0579 +
           23393632-23393734,23393765-23394513,23395958-23396315,
           23396830-23396852
          Length = 410

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 22  RVCIHRSRRGVAAGDDDR*NIRTSSVVKLQL 114
           ++CI +SR G A  DDD  N + S V  L +
Sbjct: 343 KICIFQSRHGTAP-DDDELNAKLSMVASLNI 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,031,959
Number of Sequences: 37544
Number of extensions: 407124
Number of successful extensions: 1034
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)