Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0569
         (638 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB72ED Cluster: PREDICTED: similar to CG33950-PD...    47   3e-04
UniRef50_Q06561 Cluster: Basement membrane proteoglycan precurso...    44   0.002
UniRef50_P98160 Cluster: Basement membrane-specific heparan sulf...    36   0.62 
UniRef50_Q67L58 Cluster: Putative uncharacterized protein; n=1; ...    34   2.5  
UniRef50_P17255 Cluster: Vacuolar ATP synthase catalytic subunit...    34   2.5  
UniRef50_Q7QYI3 Cluster: GLP_80_35531_39634; n=1; Giardia lambli...    33   4.4  

>UniRef50_UPI0000DB72ED Cluster: PREDICTED: similar to CG33950-PD,
            isoform D; n=1; Apis mellifera|Rep: PREDICTED: similar to
            CG33950-PD, isoform D - Apis mellifera
          Length = 3382

 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
 Frame = +2

Query: 17   KSAPATGISNVMNADSNIYIGGIPSWLNIHG--YPGFIGCIENVETTDSHRGLNLRDTAV 190
            +S+ + G    +N   N+Y+GG+P +   +G    GF GCI  +E  DS   +++ D A+
Sbjct: 3243 ESSTSYGTQQDLNTKGNVYLGGVPDYAMTYGKYQEGFSGCIYTMEVQDS-GAIDIGDKAI 3301

Query: 191  AGRNTQLC 214
             G+N   C
Sbjct: 3302 RGKNVSPC 3309


>UniRef50_Q06561 Cluster: Basement membrane proteoglycan precursor;
            n=8; Eukaryota|Rep: Basement membrane proteoglycan
            precursor - Caenorhabditis elegans
          Length = 3375

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 29   ATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGR 199
            +TGI  ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+
Sbjct: 3297 STGILAMLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGK 3354

Query: 200  NTQLC 214
            N + C
Sbjct: 3355 NVKPC 3359


>UniRef50_P98160 Cluster: Basement membrane-specific heparan sulfate
            proteoglycan core protein precursor; n=26; Eumetazoa|Rep:
            Basement membrane-specific heparan sulfate proteoglycan
            core protein precursor - Homo sapiens (Human)
          Length = 4391

 Score = 36.3 bits (80), Expect = 0.62
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
 Frame = +2

Query: 2    VDGVDK-SAPATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG- 166
            VDG +  S  + G +  +NA  ++YIGG P    + G     G  GC++N+    +  G 
Sbjct: 4309 VDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGA 4368

Query: 167  -----LNLRDTAVAGRNTQLC 214
                 L+L+  A AG NT+ C
Sbjct: 4369 PPPQPLDLQHRAQAGANTRPC 4389


>UniRef50_Q67L58 Cluster: Putative uncharacterized protein; n=1;
           Symbiobacterium thermophilum|Rep: Putative
           uncharacterized protein - Symbiobacterium thermophilum
          Length = 384

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -2

Query: 190 HSGVSQIQSSVAVRCLNILNATDEAWISVDVQPAWYSTDVYVGVSVHDVG 41
           HS   +       R   +LN  D A + V+  P WY+ DVY  V+    G
Sbjct: 2   HSAQLEYAEHSPARIRALLNRIDPAAVGVETPPQWYAEDVYFEVAYESYG 51


>UniRef50_P17255 Cluster: Vacuolar ATP synthase catalytic subunit A
           (EC 3.6.3.14) (V-ATPase subunit A) (Vacuolar proton pump
           subunit A) [Contains: Endonuclease PI-SceI (EC 3.1.-.-)
           (VMA1-derived endonuclease) (VDE) (Sce VMA intein)];
           n=14; Ascomycota|Rep: Vacuolar ATP synthase catalytic
           subunit A (EC 3.6.3.14) (V-ATPase subunit A) (Vacuolar
           proton pump subunit A) [Contains: Endonuclease PI-SceI
           (EC 3.1.-.-) (VMA1-derived endonuclease) (VDE) (Sce VMA
           intein)] - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1071

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 8   GVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRDTA 187
           G  K+  +  +S   N+D+ IY+G      N+    G I CIEN+E  +   G + R   
Sbjct: 260 GCGKTVISQSLSKYSNSDAIIYVGCFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPRE 319

Query: 188 V 190
           V
Sbjct: 320 V 320


>UniRef50_Q7QYI3 Cluster: GLP_80_35531_39634; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_80_35531_39634 - Giardia lamblia
           ATCC 50803
          Length = 1367

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = +2

Query: 365 IGRSSDHYQLTTIAIVELSSKFSIQVR**VLGCHLKINIRCGLVYREILTLYITVVFSIK 544
           I +S DHY LT  +I  LSSK+S+ +    L  H+K N    L++ +   ++  +   + 
Sbjct: 638 IHKSPDHYDLTVRSITALSSKYSLFME---LITHIKNNNHRALIFCDYQIIFSMLEHLLS 694

Query: 545 IDSITTIRL 571
            + I  +RL
Sbjct: 695 HNDIPYLRL 703


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,543,611
Number of Sequences: 1657284
Number of extensions: 10312553
Number of successful extensions: 23649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23642
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)