Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0569
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   3.0  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   5.3  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   7.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   9.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.2  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    25   9.2  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 199 STSHSGVSQIQSSVA---VRCLNILNATDEAWISVDVQPAWYSTDV 71
           +T  SG+ +    +A   + C  +++  +EAWI   V+ A+  TDV
Sbjct: 446 NTGKSGIFEANMYLAEDRILCFELVSKKNEAWILHYVKSAYADTDV 491


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 470 KINIRCGLVYREILTLYITVVFSIKIDSITTI 565
           K+ I C   Y  + + + + VFS+  ++ITTI
Sbjct: 133 KLKITCVYSYVALCSTFASSVFSVPAEAITTI 164


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 80  GIPSWLNIHGYPGFIGCIENVETTDS 157
           G+  W+++HG PG     EN   T S
Sbjct: 148 GLKVWIDLHGVPGSQNGFENSGKTGS 173


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 38  ISNVMNADSNIYIGGIPSWLNIHGY 112
           +   M+  +NIY G + + L++ GY
Sbjct: 839 MKKTMHGSTNIYFGAVKATLHVFGY 863


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 208 LRVSTSHSGVSQIQSSVAVRCLNI 137
           LR    HS +SQI+S + VR  NI
Sbjct: 686 LRTHIEHSVISQIKSELLVRVPNI 709


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 334 RNHEIIIFKIYDAFQFYESVEIFYLIIRSFRFDELKSG 221
           R   + +F   D   FY S  + Y  +RSFRF  + +G
Sbjct: 381 RKSLLSMFTQLDNGGFYYSKHLNYYKVRSFRFTPVNTG 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,660
Number of Sequences: 5004
Number of extensions: 45292
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)