Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0569
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 35 0.049
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 32 0.34
SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_9877| Best HMM Match : DUF952 (HMM E-Value=1.5) 30 1.8
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24) 29 4.2
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07) 28 5.6
SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97) 28 7.4
SB_21530| Best HMM Match : rve (HMM E-Value=0.0013) 27 9.7
SB_20408| Best HMM Match : rve (HMM E-Value=0.0034) 27 9.7
SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 27 9.7
SB_38509| Best HMM Match : rve (HMM E-Value=7.2e-11) 27 9.7
SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13) 27 9.7
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 35.1 bits (77), Expect = 0.049
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 2 VDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 142
+DG ++ G S V S +YIGG S G P F GCI+NV
Sbjct: 131 LDGKWRNGSIPGPSFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 177
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/37 (48%), Positives = 20/37 (54%)
Frame = +2
Query: 32 TGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 142
TG S V S +YIGG S G P F GCI+NV
Sbjct: 829 TGPSFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 865
>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1049
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 65 NIYIGGIPSWLNIHGY-PGFIGCIENV 142
++YIGG P + G PGFIGCI N+
Sbjct: 996 SLYIGGEPGGMREDGSNPGFIGCIRNI 1022
>SB_59235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 41 SNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV 142
S V S +YIGG S G P F GCI+NV
Sbjct: 3 SFVKITSSKVYIGGTTSLEKELGIPNFQGCIKNV 36
>SB_9877| Best HMM Match : DUF952 (HMM E-Value=1.5)
Length = 258
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 136 LNATDEAWISVDVQ-PAWYSTDVYVGVSVHDVGDTGGRRA 20
+NAT+ + P + TDVY+ V+ D+ D G RRA
Sbjct: 174 INATETRMTGFAPEVPLEFGTDVYIAVNEEDLQDNGRRRA 213
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Frame = +2
Query: 2 VDGV-DKSAPATGISNVMNADSNIYIGGIPS----------WLNIHGYPGFIGCIENVET 148
VDG+ S ++G S ++ + +YIGG+P+ + YP FIGCI++V +
Sbjct: 1436 VDGIYTASGSSSGASTFISMGTGVYIGGLPTDFIITRSDPPAARVGRYP-FIGCIKSVTS 1494
Query: 149 TDS 157
S
Sbjct: 1495 QGS 1497
>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
Length = 1001
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 32 TGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGL 169
T ++ VM AD +YIGG+ HGY +E +S+ G+
Sbjct: 12 TIVTVVMAADKPLYIGGLFDLSTKHGYGALPAAEMAIEEINSNAGI 57
>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 892
Score = 28.7 bits (61), Expect = 4.2
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +2
Query: 2 VDGVDKSAPATGISNVMNADSNIYIGGIPSWLNIHGYPGFIGCIENV----ETTDSHRGL 169
V+G SA + V + IGG Y GF+GC++NV E +S R
Sbjct: 283 VNGKSYSARVPTRAGVFTTSYEVQIGGY----GFSNYAGFVGCLQNVKEQGELIESQRYP 338
Query: 170 NL-RDTAVAGRNTQLCRDS*FEFIETKTTN 256
+L + + G+ TQ+ EFI + N
Sbjct: 339 SLMMNDILKGKCTQVVASE--EFIPKEKMN 366
>SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)
Length = 554
Score = 28.3 bits (60), Expect = 5.6
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 266 KNLYAFIKLECI---VYFKYYNLMITQLEDLLS*FTIGRSSDHYQLTTIAIVELSSKFSI 436
K+L+ FI L + VYF ++ T++ F HY L+TI L F
Sbjct: 357 KSLHDFIMLFLVYFAVYFSLCGVLTTKVFSQAKDFGPREDFQHYVLSTILGEFLGRSFMS 416
Query: 437 QVR**VLGCHLKINIRCGLVYREILTLYITVVFSIKIDSITTIRLLC 577
+R G + K+ G++ + L+I V+ I I + ++C
Sbjct: 417 LLRSKTPGVNYKLPSVFGIIAVFLAVLFILSVWFSWISRIWVMFVVC 463
>SB_473| Best HMM Match : Ribosomal_60s (HMM E-Value=0.97)
Length = 757
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 100 VQPAWYSTDVYVGVSVHDVGDTGGRRA 20
V P T+VY+ V+ D+ D G RRA
Sbjct: 684 VNPLEVGTEVYIAVNEEDLQDNGRRRA 710
>SB_21530| Best HMM Match : rve (HMM E-Value=0.0013)
Length = 322
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 94 PAWYSTDVYVGVSVHDVGDTGGRRA 20
P TDVY+ V+ D+ D G RRA
Sbjct: 253 PLEVGTDVYIAVNEEDLQDKGRRRA 277
>SB_20408| Best HMM Match : rve (HMM E-Value=0.0034)
Length = 887
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 100 VQPAWYSTDVYVGVSVHDVGDTGGRRAL 17
V P T+VY+ V+ D+ D G RRA+
Sbjct: 823 VVPLEVGTEVYIAVNEEDLQDKGRRRAM 850
>SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 490
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 209 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 243
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 223 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 257
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 237 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 271
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 251 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 285
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 265 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 299
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 279 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 313
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 293 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 327
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 363 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 397
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 377 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 411
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 391 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 425
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 405 HRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKH 439
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 31 HRYLQRHER*LQHIHRWNTKLVEHP-RISRLHRLH 132
HRY ++H + IHR+ K + P RI R R H
Sbjct: 433 HRYTRKHAKIPTQIHRYTRKHAKIPTRIHRYTRKH 467
>SB_38509| Best HMM Match : rve (HMM E-Value=7.2e-11)
Length = 244
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 94 PAWYSTDVYVGVSVHDVGDTGGRRA 20
P TDVY+ V+ D+ D G RRA
Sbjct: 175 PLEVGTDVYIAVNEEDLQDKGRRRA 199
>SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)
Length = 168
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 561 VVIESILILNTTVIYNVNIS 502
+VI +I+I NTTVIY + IS
Sbjct: 133 IVIVTIVIFNTTVIYIITIS 152
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,535
Number of Sequences: 59808
Number of extensions: 322887
Number of successful extensions: 837
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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