Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0569
(638 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-speci... 38 0.023
X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h... 37 0.069
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly... 36 0.092
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog... 36 0.092
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog... 36 0.092
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog... 36 0.092
Z95636-1|CAB09137.1| 953|Homo sapiens laminin alpha 5 chain pro... 31 3.4
BC003355-1|AAH03355.1| 670|Homo sapiens LAMA5 protein protein. 31 3.4
AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein. 31 3.4
AK057327-1|BAB71429.1| 721|Homo sapiens protein ( Homo sapiens ... 31 3.4
AF463518-1|AAL68839.1| 1311|Homo sapiens cell recognition protei... 31 3.4
AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain pr... 31 3.4
AB100094-1|BAC55272.1| 1308|Homo sapiens hypothetical protein pr... 31 3.4
AB051550-1|BAB21854.2| 1322|Homo sapiens KIAA1763 protein protein. 31 3.4
AB011105-1|BAA25459.1| 1645|Homo sapiens KIAA0533 protein protein. 31 3.4
D87469-1|BAA13407.2| 2854|Homo sapiens KIAA0279 protein protein. 31 4.6
AL390252-1|CAI13170.1| 2923|Homo sapiens cadherin, EGF LAG seven... 31 4.6
AF234887-1|AAG00080.1| 2923|Homo sapiens FLAMINGO 1 protein. 31 4.6
AB065955-1|BAC06168.1| 2923|Homo sapiens seven transmembrane hel... 31 4.6
Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein. 30 8.0
X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein. 30 8.0
X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein. 30 8.0
S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain pro... 30 8.0
BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein. 30 8.0
AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein. 30 8.0
AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein p... 30 8.0
>AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-specific
heparan sulfate proteoglycan core protein precursor
protein.
Length = 2331
Score = 38.3 bits (85), Expect = 0.023
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 2 VDGVDK-SAPATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG- 166
VDG + S + G + +NA N+YIGG P + G G GC++N+ + G
Sbjct: 2249 VDGEELVSGRSPGPNVAVNAKGNVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGA 2308
Query: 167 -----LNLRDTAVAGRNTQLC 214
L+L+ A AG NT+ C
Sbjct: 2309 PPPQPLDLQHRAQAGANTRPC 2329
>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
heparan sulfate proteoglycan core protein protein.
Length = 4393
Score = 36.7 bits (81), Expect = 0.069
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 2 VDGVDK-SAPATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG- 166
VDG + S + G + +NA +IYIGG P + G G GC++N+ + G
Sbjct: 4311 VDGEELVSGRSPGPNVAVNAKGSIYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGA 4370
Query: 167 -----LNLRDTAVAGRNTQLC 214
L+L+ A AG NT+ C
Sbjct: 4371 PPPQPLDLQHRAQAGANTRPC 4391
>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
protein.
Length = 4391
Score = 36.3 bits (80), Expect = 0.092
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 2 VDGVDK-SAPATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG- 166
VDG + S + G + +NA ++YIGG P + G G GC++N+ + G
Sbjct: 4309 VDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGA 4368
Query: 167 -----LNLRDTAVAGRNTQLC 214
L+L+ A AG NT+ C
Sbjct: 4369 PPPQPLDLQHRAQAGANTRPC 4389
>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 36.3 bits (80), Expect = 0.092
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 2 VDGVDK-SAPATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG- 166
VDG + S + G + +NA ++YIGG P + G G GC++N+ + G
Sbjct: 4309 VDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGA 4368
Query: 167 -----LNLRDTAVAGRNTQLC 214
L+L+ A AG NT+ C
Sbjct: 4369 PPPQPLDLQHRAQAGANTRPC 4389
>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 36.3 bits (80), Expect = 0.092
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 2 VDGVDK-SAPATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG- 166
VDG + S + G + +NA ++YIGG P + G G GC++N+ + G
Sbjct: 4309 VDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGA 4368
Query: 167 -----LNLRDTAVAGRNTQLC 214
L+L+ A AG NT+ C
Sbjct: 4369 PPPQPLDLQHRAQAGANTRPC 4389
>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
perlecan protein.
Length = 4370
Score = 36.3 bits (80), Expect = 0.092
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 2 VDGVDK-SAPATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRG- 166
VDG + S + G + +NA ++YIGG P + G G GC++N+ + G
Sbjct: 4288 VDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGA 4347
Query: 167 -----LNLRDTAVAGRNTQLC 214
L+L+ A AG NT+ C
Sbjct: 4348 PPPQPLDLQHRAQAGANTRPC 4368
>Z95636-1|CAB09137.1| 953|Homo sapiens laminin alpha 5 chain
protein.
Length = 953
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 14 DKSAP-ATGISNVMNADSNIYIGGIPSWLN---IHGYPGFIGCIE 136
D AP A G+ N+ D Y+GG PS + +PG+ GCIE
Sbjct: 115 DTVAPGAEGLLNLRPDDFVFYVGGYPSTFTPPPLLRFPGYRGCIE 159
>BC003355-1|AAH03355.1| 670|Homo sapiens LAMA5 protein protein.
Length = 670
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 14 DKSAP-ATGISNVMNADSNIYIGGIPSWLN---IHGYPGFIGCIE 136
D AP A G+ N+ D Y+GG PS + +PG+ GCIE
Sbjct: 63 DTVAPGAEGLLNLRPDDFVFYVGGYPSTFTPPPLLRFPGYRGCIE 107
>AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein.
Length = 3690
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 14 DKSAP-ATGISNVMNADSNIYIGGIPSWLN---IHGYPGFIGCIE 136
D AP A G+ N+ D Y+GG PS + +PG+ GCIE
Sbjct: 2857 DTVAPGAEGLLNLRPDDFVFYVGGYPSTFTPPPLLRFPGYRGCIE 2901
>AK057327-1|BAB71429.1| 721|Homo sapiens protein ( Homo sapiens
cDNA FLJ32765 fis, clone TESTI2001852, weakly similar to
Homo sapiens contactin associated protein (Caspr) mRNA.
).
Length = 721
Score = 31.1 bits (67), Expect = 3.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 29 ATGISNVMNADSNIYIGGIPSWLNIHGYP--GFIGCIENV 142
A G N+MN D I GGIP+ +P F GC+EN+
Sbjct: 272 ARGEFNLMNLDYEISFGGIPAPGKSVSFPHRNFHGCLENL 311
>AF463518-1|AAL68839.1| 1311|Homo sapiens cell recognition protein
CASPR4 protein.
Length = 1311
Score = 31.1 bits (67), Expect = 3.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 29 ATGISNVMNADSNIYIGGIPSWLNIHGYP--GFIGCIENV 142
A G N+MN D I GGIP+ +P F GC+EN+
Sbjct: 300 ARGEFNLMNLDYEISFGGIPAPGKSVSFPHRNFHGCLENL 339
>AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain
precursor protein.
Length = 3695
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 14 DKSAP-ATGISNVMNADSNIYIGGIPSWLN---IHGYPGFIGCIE 136
D AP A G+ N+ D Y+GG PS + +PG+ GCIE
Sbjct: 2857 DTVAPGAEGLLNLRPDDFVFYVGGYPSTFTPPPLLRFPGYRGCIE 2901
>AB100094-1|BAC55272.1| 1308|Homo sapiens hypothetical protein
protein.
Length = 1308
Score = 31.1 bits (67), Expect = 3.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 29 ATGISNVMNADSNIYIGGIPSWLNIHGYP--GFIGCIENV 142
A G N+MN D I GGIP+ +P F GC+EN+
Sbjct: 297 ARGEFNLMNLDYEISFGGIPAPGKSVSFPHRNFHGCLENL 336
>AB051550-1|BAB21854.2| 1322|Homo sapiens KIAA1763 protein protein.
Length = 1322
Score = 31.1 bits (67), Expect = 3.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 29 ATGISNVMNADSNIYIGGIPSWLNIHGYP--GFIGCIENV 142
A G N+MN D I GGIP+ +P F GC+EN+
Sbjct: 311 ARGEFNLMNLDYEISFGGIPAPGKSVSFPHRNFHGCLENL 350
>AB011105-1|BAA25459.1| 1645|Homo sapiens KIAA0533 protein protein.
Length = 1645
Score = 31.1 bits (67), Expect = 3.4
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 14 DKSAP-ATGISNVMNADSNIYIGGIPSWLN---IHGYPGFIGCIE 136
D AP A G+ N+ D Y+GG PS + +PG+ GCIE
Sbjct: 807 DTVAPGAEGLLNLRPDDFVFYVGGYPSTFTPPPLLRFPGYRGCIE 851
>D87469-1|BAA13407.2| 2854|Homo sapiens KIAA0279 protein protein.
Length = 2854
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 62 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 181
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1671 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1709
>AL390252-1|CAI13170.1| 2923|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 2 (flamingo homolog, Drosophila) protein.
Length = 2923
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 62 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 181
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1740 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1778
>AF234887-1|AAG00080.1| 2923|Homo sapiens FLAMINGO 1 protein.
Length = 2923
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 62 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 181
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1740 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1778
>AB065955-1|BAC06168.1| 2923|Homo sapiens seven transmembrane helix
receptor protein.
Length = 2923
Score = 30.7 bits (66), Expect = 4.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 62 SNIYIGGIPSWLNIHGYPGFIGCIENVETTDSHRGLNLRD 181
SNI +GGIP GF GC++ V +D+ G+N D
Sbjct: 1740 SNITVGGIPGPAGGVAR-GFRGCLQGVRVSDTPEGVNSLD 1778
>Z99289-2|CAI42325.1| 1823|Homo sapiens laminin, alpha 4 protein.
Length = 1823
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 59 DSNIYIGGIPSWLNIH---GYPGFIGCIE 136
D+ Y+GG+PS + PGF+GC+E
Sbjct: 979 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1007
>X91171-1|CAA62596.1| 1816|Homo sapiens laminin alpha 4 protein.
Length = 1816
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 59 DSNIYIGGIPSWLNIH---GYPGFIGCIE 136
D+ Y+GG+PS + PGF+GC+E
Sbjct: 972 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1000
>X76939-1|CAA54258.1| 1581|Homo sapiens laminin A3 protein.
Length = 1581
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 59 DSNIYIGGIPSWLNIH---GYPGFIGCIE 136
D+ Y+GG+PS + PGF+GC+E
Sbjct: 737 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 765
>S78569-1|AAB34635.1| 1816|Homo sapiens laminin alpha 4 chain protein.
Length = 1816
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 59 DSNIYIGGIPSWLNIH---GYPGFIGCIE 136
D+ Y+GG+PS + PGF+GC+E
Sbjct: 972 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1000
>BC066552-1|AAH66552.1| 1816|Homo sapiens LAMA4 protein protein.
Length = 1816
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 59 DSNIYIGGIPSWLNIH---GYPGFIGCIE 136
D+ Y+GG+PS + PGF+GC+E
Sbjct: 972 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1000
>AL590106-3|CAI12950.1| 1823|Homo sapiens laminin, alpha 4 protein.
Length = 1823
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 59 DSNIYIGGIPSWLNIH---GYPGFIGCIE 136
D+ Y+GG+PS + PGF+GC+E
Sbjct: 979 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1007
>AB210027-1|BAE06109.1| 1852|Homo sapiens LAMA4 variant protein
protein.
Length = 1852
Score = 29.9 bits (64), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 59 DSNIYIGGIPSWLNIH---GYPGFIGCIE 136
D+ Y+GG+PS + PGF+GC+E
Sbjct: 1008 DTVFYVGGVPSNFKLPTSLNLPGFVGCLE 1036
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,231,616
Number of Sequences: 237096
Number of extensions: 1465286
Number of successful extensions: 2771
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2771
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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