Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0569
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    44   7e-05
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    44   7e-05
AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlec...    44   7e-05
Z75553-6|CAA99951.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z75529-9|CAA99789.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.70 

>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 29   ATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGR 199
            +TGI  ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+
Sbjct: 3297 STGILAMLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGK 3354

Query: 200  NTQLC 214
            N + C
Sbjct: 3355 NVKPC 3359


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 29   ATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGR 199
            +TGI  ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+
Sbjct: 3297 STGILAMLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGK 3354

Query: 200  NTQLC 214
            N + C
Sbjct: 3355 NVKPC 3359


>AF132883-1|AAD25092.1|  925|Caenorhabditis elegans UNC-52/Perlecan
            protein.
          Length = 925

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 29   ATGISNVMNADSNIYIGGIPSWLNIHG---YPGFIGCIENVETTDSHRGLNLRDTAVAGR 199
            +TGI  ++N D NI++GG+P      G      F+GCI +VE       L+L  TA+ G+
Sbjct: 847  STGILAMLNVDGNIFVGGVPDISKATGGLFSNNFVGCIADVELNGVK--LDLMATAIDGK 904

Query: 200  NTQLC 214
            N + C
Sbjct: 905  NVKPC 909


>Z75553-6|CAA99951.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC443.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 35  GISNVMNADSNIYIGGIPSWLN----IHGYPGFIGCIEN 139
           GI +V+NADS +Y+GG+   L     I  YPG    I++
Sbjct: 161 GIRSVINADSTLYMGGMKGALGEPAAISYYPGLFSSIDD 199


>Z75529-9|CAA99789.1|  534|Caenorhabditis elegans Hypothetical
           protein ZC443.6 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +2

Query: 35  GISNVMNADSNIYIGGIPSWLN----IHGYPGFIGCIEN 139
           GI +V+NADS +Y+GG+   L     I  YPG    I++
Sbjct: 161 GIRSVINADSTLYMGGMKGALGEPAAISYYPGLFSSIDD 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,424
Number of Sequences: 27780
Number of extensions: 248592
Number of successful extensions: 521
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)