Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0568
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    29   0.77 
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   7.2  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 579 NSLVXFASGDPFAVSLRVVPITDCCVSSLQRFYSRYLIPRIIEN 448
           N ++  AS D     L   P T  C+SS+  F +R  IP+II+N
Sbjct: 159 NLIISSASSDKSDDDLNAWPFTAGCISSVLYFCAR--IPQIIKN 200


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 549 PFAVSL-RVVPITDCCVSSLQRFYSRYLIPRIIENIPHISSSSFRYL 412
           P  VSL    P TD  + SL     R ++P  ++N   +SS+S R+L
Sbjct: 582 PLYVSLLEKTPFTDPSIPSL---VERTIVPAELQNEITVSSASLRFL 625


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -1

Query: 377 SRCY*VLRYSFDYSAI--DSVTLTGVTLLYSIYRFKQYFLHIFPLLL 243
           SR   +L YS  Y  +    V      L +SI +    F+H FP L+
Sbjct: 185 SRRLFILSYSISYGTLAWSVVAWRNSLLFHSIDKITSLFIHFFPPLV 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,331
Number of Sequences: 5004
Number of extensions: 37074
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)