Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0568
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64822-1|AAB63354.1|  373|Homo sapiens josephin MJD1 protein.          31   4.7  
U64821-1|AAB63353.1|  364|Homo sapiens josephin MJD1 protein.          31   4.7  
U64820-1|AAB63352.1|  361|Homo sapiens josephin MJD1 protein.          31   4.7  
S75313-1|AAB33571.1|  360|Homo sapiens MJD1 protein protein.           31   4.7  
EU009923-1|ABS29269.1|  361|Homo sapiens ataxin 3 protein.             31   4.7  
BC095402-1|AAH95402.1|  370|Homo sapiens ATXN3 protein protein.        31   4.7  
BC033711-1|AAH33711.1|  370|Homo sapiens ATXN3 protein protein.        31   4.7  
AB038653-2|BAB55646.1|  364|Homo sapiens ataxin-3 protein.             31   4.7  
AB038653-1|BAB55645.1|  361|Homo sapiens ataxin-3 protein.             31   4.7  

>U64822-1|AAB63354.1|  373|Homo sapiens josephin MJD1 protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 3   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 44


>U64821-1|AAB63353.1|  364|Homo sapiens josephin MJD1 protein.
          Length = 364

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


>U64820-1|AAB63352.1|  361|Homo sapiens josephin MJD1 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


>S75313-1|AAB33571.1|  360|Homo sapiens MJD1 protein protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


>EU009923-1|ABS29269.1|  361|Homo sapiens ataxin 3 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


>BC095402-1|AAH95402.1|  370|Homo sapiens ATXN3 protein protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


>BC033711-1|AAH33711.1|  370|Homo sapiens ATXN3 protein protein.
          Length = 370

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


>AB038653-2|BAB55646.1|  364|Homo sapiens ataxin-3 protein.
          Length = 364

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


>AB038653-1|BAB55645.1|  361|Homo sapiens ataxin-3 protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360
           +F +K  G +C ++CLN  ++    +PV ++ SIA   +E  R
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,004,524
Number of Sequences: 237096
Number of extensions: 1132334
Number of successful extensions: 1778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)