BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0568 (650 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U64822-1|AAB63354.1| 373|Homo sapiens josephin MJD1 protein. 31 4.7 U64821-1|AAB63353.1| 364|Homo sapiens josephin MJD1 protein. 31 4.7 U64820-1|AAB63352.1| 361|Homo sapiens josephin MJD1 protein. 31 4.7 S75313-1|AAB33571.1| 360|Homo sapiens MJD1 protein protein. 31 4.7 EU009923-1|ABS29269.1| 361|Homo sapiens ataxin 3 protein. 31 4.7 BC095402-1|AAH95402.1| 370|Homo sapiens ATXN3 protein protein. 31 4.7 BC033711-1|AAH33711.1| 370|Homo sapiens ATXN3 protein protein. 31 4.7 AB038653-2|BAB55646.1| 364|Homo sapiens ataxin-3 protein. 31 4.7 AB038653-1|BAB55645.1| 361|Homo sapiens ataxin-3 protein. 31 4.7 >U64822-1|AAB63354.1| 373|Homo sapiens josephin MJD1 protein. Length = 373 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 3 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 44 >U64821-1|AAB63353.1| 364|Homo sapiens josephin MJD1 protein. Length = 364 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 >U64820-1|AAB63352.1| 361|Homo sapiens josephin MJD1 protein. Length = 361 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 >S75313-1|AAB33571.1| 360|Homo sapiens MJD1 protein protein. Length = 360 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 >EU009923-1|ABS29269.1| 361|Homo sapiens ataxin 3 protein. Length = 361 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 >BC095402-1|AAH95402.1| 370|Homo sapiens ATXN3 protein protein. Length = 370 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 >BC033711-1|AAH33711.1| 370|Homo sapiens ATXN3 protein protein. Length = 370 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 >AB038653-2|BAB55646.1| 364|Homo sapiens ataxin-3 protein. Length = 364 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 >AB038653-1|BAB55645.1| 361|Homo sapiens ataxin-3 protein. Length = 361 Score = 30.7 bits (66), Expect = 4.7 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +1 Query: 232 VFQDKSSGKMCKKYCLNR*IEYNNVTPVRVTLSIAE*SNEYRR 360 +F +K G +C ++CLN ++ +PV ++ SIA +E R Sbjct: 4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELS-SIAHQLDEEER 45 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 67,004,524 Number of Sequences: 237096 Number of extensions: 1132334 Number of successful extensions: 1778 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1778 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 7253890590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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