Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0567
         (619 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    54   3e-06
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   1.0  
UniRef50_Q8D2I4 Cluster: PurU protein; n=1; Wigglesworthia gloss...    35   1.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 24/37 (64%), Positives = 28/37 (75%)
 Frame = -3

Query: 443 LLLRWVDELTSQLVVKWLLEPIDIYNVNAPPTLRYKF 333
           LLLRWVDELT+ LV+     P  +Y+VNAPPT RYKF
Sbjct: 155 LLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 279 YCFTAEIGRR---WYLPARTHKTSYHQ 208
           + F   +G R   WYLPARTHK SYH+
Sbjct: 559 HAFRRRLGSRAEWWYLPARTHKRSYHR 585


>UniRef50_Q8D2I4 Cluster: PurU protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           PurU protein - Wigglesworthia glossinidia brevipalpis
          Length = 289

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = -3

Query: 572 FKCLNSIAT*IEKKITEL*-IQISYYENNRKNLTCITLLRKKYILLLRWVDELTSQLVVK 396
           +K L S+A   E     +  I +S  ++N K L  I +L+  YI+L +++  LTS  + K
Sbjct: 130 YKILKSLAKLFEIPFYHVSHISLSREDHNNKILNIIQILKPDYIILAKYMRILTSSFIKK 189

Query: 395 WLLEPIDIYNVNAP 354
           ++ + I+I++   P
Sbjct: 190 YINKIINIHHSILP 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,432,655
Number of Sequences: 1657284
Number of extensions: 9815541
Number of successful extensions: 20320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20315
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)