Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0567
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.17 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   2.7  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.3  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 273 SSNAFRFEGRGSRCNYTEILEFISQSGWRI 362
           + N+ ++ G      Y EI+E   + GW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 586 VRGFLFALICD 618
           + GFLF LICD
Sbjct: 13  IAGFLFLLICD 23


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 279 NAFRFEGRGSRCNYTEILEFISQSGW 356
           +A R+ G      Y EI+E  +  GW
Sbjct: 290 DAGRYTGERGMMGYNEIVEAQNAGGW 315


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 261 IGRRWYLPARTHKTSYHQ 208
           +GRRW+   R  +  Y++
Sbjct: 513 LGRRWHALGREEQAKYYE 530


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 261 IGRRWYLPARTHKTSYHQ 208
           +GRRW+   R  +  Y++
Sbjct: 405 LGRRWHALGREEQAKYYE 422


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 395 WLLEPIDIYNVNAPPTLRYK 336
           WL  P  + N   P +LR+K
Sbjct: 7   WLTPPHSLGNTVTPVSLRFK 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,459
Number of Sequences: 336
Number of extensions: 2633
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)