Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0567
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0421 - 22756903-22757384,22757585-22758047                       29   3.0  
10_08_0777 + 20489528-20490649                                         27   9.0  

>02_04_0421 - 22756903-22757384,22757585-22758047
          Length = 314

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 552 RDVN*KENH*AIDTNQLL*EQQKKSHMHYITKKK 451
           RDVN + NH   + N ++ +    SHM+Y T ++
Sbjct: 254 RDVNYRHNHPLYNNNPIVQKHPSFSHMYYATNRE 287


>10_08_0777 + 20489528-20490649
          Length = 373

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 301 GAAVVTIPRS*NLYLKVGGAFTL*MSMGSSNHLTTSWDVSSSTHLSNKIYFF 456
           GAA +T+P S  +Y    G   L M   +  +LTT   +    H  N  + F
Sbjct: 304 GAAALTVPPSKYMYDAGNGTVCLAMMSSAMLNLTTELSILGRLHQENIHFLF 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,553
Number of Sequences: 37544
Number of extensions: 271730
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)