Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0567
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            30   1.3  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              30   1.3  
SB_55033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)               28   7.0  
SB_52702| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_17721| Best HMM Match : PWWP (HMM E-Value=3.3e-05)                  27   9.2  

>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 327 SRYSYNGCPALRTETRYCFTAEIGRRWYLPART 229
           S+   N C   +T+  +C T++I   WY P +T
Sbjct: 185 SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 217


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 327 SRYSYNGCPALRTETRYCFTAEIGRRWYLPART 229
           S+   N C   +T+  +C T++I   WY P +T
Sbjct: 30  SKTQANWCHPYKTQANWCHTSKIQSNWYHPNKT 62


>SB_55033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 619 SHKLAQKENPLLINTSLNVLILSRRELKRKSLSYRYKSATMRTTEKISHAL 467
           SH +A+    +L    + V  L      RKSL +RYK + + TT++ S+ L
Sbjct: 23  SHVMAKGRQDVLSLEKMMVQSLRVCGPGRKSLGFRYKYSNLNTTQQTSNGL 73


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = -2

Query: 408 AGC*VVTRAHRHLQRKCATHFEI*ILRSRYSYNGCPALRTETRYCFTAEIGRRWYLPART 229
           A C   T+ H +      TH       ++   N C   +T+   C   +    WY P++T
Sbjct: 294 ANCGHPTKTHANWCHPTTTHANW-CYPTKTQANWCHPTKTQACLCHPTKTQANWYHPSKT 352

Query: 228 HKTSYH 211
               YH
Sbjct: 353 QVNWYH 358



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 312 NGCPALRTETRYCFTAEIGRRWYLPARTHKTSYH 211
           N C   +T+   C   +    WY P++T    YH
Sbjct: 445 NWCHPTKTQANLCHPTKTQANWYHPSKTQANWYH 478


>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
          Length = 430

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 333 LRSRYSYNGCPALRTETRYCFTAEIGRRWYLPARTHKTSYHQ 208
           LR  +S   CPA + E R C   ++G    +   T K+S HQ
Sbjct: 110 LRHSFSQGKCPAFKQECRKC--KKVGHFARVCRSTRKSSVHQ 149


>SB_52702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 326 LGIVTTAAPPFEPKRVTASRQK*AGGGTYPRGLTRRPTTSKYP 198
           +G+ + AA   + +R+     +   GG  P GL R P  S++P
Sbjct: 1   MGLPSQAATAEDNRRLGVQVLRVVNGGVAPTGLPRPPGKSRFP 43


>SB_17721| Best HMM Match : PWWP (HMM E-Value=3.3e-05)
          Length = 149

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 562 LILSRRELKRKSLSYRYKSATMRTTEKISHALH 464
           L+  R+   RKSL   Y+ A +   ++ SHA H
Sbjct: 64  LLEGRKTSMRKSLQQAYERAIVHRNQRCSHATH 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,735
Number of Sequences: 59808
Number of extensions: 302781
Number of successful extensions: 633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)