Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0567
         (619 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            26   1.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   1.1  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   4.5  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 449  YILLLRWVDELTSQLVVKWLLEPIDIYNVNAPPT 348
            ++L L W  E+  Q  +  L+E +  Y  N P T
Sbjct: 943  HLLHLNWKHEVHRQSTIDVLIEDLHTYTFNPPET 976


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 449  YILLLRWVDELTSQLVVKWLLEPIDIYNVNAPPT 348
            ++L L W  E+  Q  +  L+E +  Y  N P T
Sbjct: 944  HLLHLNWKHEVHRQSTIDVLIEDLHTYTFNPPET 977


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 314 TTAAPPF-EPKRVTASRQK*AGGGTYPRGLTRRPTTSKYPNLH 189
           TT  PP  +P  + A+    AGGG  P G     TTS   + H
Sbjct: 567 TTRLPPLHQPFPMLANH---AGGGAIPEGQEPTSTTSLTTSAH 606


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,257
Number of Sequences: 2352
Number of extensions: 10361
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)