Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0567
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65230.1 68414.m07395 expressed protein                             28   5.7  
At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-relate...    27   7.5  
At5g38270.1 68418.m04613 F-box family protein contains F-box dom...    27   10.0 

>At1g65230.1 68414.m07395 expressed protein
          Length = 286

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +1

Query: 295 KGGAAVVTIPRS*NLYLKVGGAFTL*MSMGSSNHLTTSWDVSSSTHLSNKIYFFLS 462
           KG    +    S +L +KV   FTL    G       SWD+SSS+ ++ + YF+ S
Sbjct: 157 KGKPKSILAAVSGDLIVKVKSEFTLNQISGQVFEHEESWDLSSSSPIA-QAYFWTS 211


>At3g23460.1 68416.m02956 cyclopropane fatty acid synthase-related
           similar to cyclopropane synthase [Sterculia foetida]
           GI:21069167
          Length = 305

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 246 TTACLFLP*SSNAFRFEGRGSRCNYTEILEFIS-QSGWRI 362
           +T C+ +    N   FEG+ SRC+    LE  S Q  W++
Sbjct: 33  STGCVTIFEGGNMVTFEGKDSRCHLKSELEIHSPQFYWKV 72


>At5g38270.1 68418.m04613 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 406

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 503 YYENNRK-NLTCITLLRKKYILLLRWVDELTSQLVVKWL 390
           + E +RK  ++ IT+ R+   +L  W+DE T   VV W+
Sbjct: 156 FVEPSRKVTVSKITITRESRAVL--WIDERTGDFVVAWI 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,209,010
Number of Sequences: 28952
Number of extensions: 214387
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)