Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0566
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...   114   8e-27
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.2  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.8  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   2.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.8  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.0  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   5.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   6.6  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   8.7  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   8.7  

>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score =  114 bits (275), Expect = 8e-27
 Identities = 59/99 (59%), Positives = 68/99 (68%), Gaps = 6/99 (6%)
 Frame = +1

Query: 256 VVLMSHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIIL 435
           V+LMSHLGRP+G    KY+LKPVA EL KLL K V FL+DC+GPEVE AC     G +IL
Sbjct: 58  VILMSHLGRPNGARVAKYSLKPVAAELSKLLGKPVKFLDDCVGPEVEKACKEAKGGEVIL 117

Query: 436 LENLRFHIEEE------GKGVDASGAKVKAVQKKLKPLG 534
           LENLRFHIEEE      GK V A  + V+A +K L  LG
Sbjct: 118 LENLRFHIEEEGSAKVDGKKVKADASAVEAFRKSLTSLG 156



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 30/51 (58%), Positives = 38/51 (74%)
 Frame = +2

Query: 101 KLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAK 253
           KL+I  ++L GK VL+RVDFNVPL    ITNN RIV AL ++KYAL++  K
Sbjct: 6   KLAITDVDLKGKNVLIRVDFNVPLDGDRITNNARIVGALPTIKYALEQQPK 56



 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = +3

Query: 519 VKAFRASLRKLGDVYINDAFGTAHRAHSSMVG 614
           V+AFR SL  LGD+++NDAFGTAHRAHSSMVG
Sbjct: 145 VEAFRKSLTSLGDIFVNDAFGTAHRAHSSMVG 176


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = -3

Query: 449 RRFSSRIIEPAEGLAHAVSTSGPMQSFKNVTSLFSNFFSSSATGLRVYLRFTWPSGLPKC 270
           + F S ++E  + +   VS + P +S  N  S      +SSA+   + +    P  +PK 
Sbjct: 176 QEFLSIVVENYKSMTTVVSEAFPPRSAPNTPSSHPMSAASSASPAEIGMEHAGPKMIPKA 235

Query: 269 DISTTI*RLYP 237
             S  +   +P
Sbjct: 236 SSSFKVTAEFP 246


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 587 CSTK--SIINIDITKFSQACPKGFNFFWTAFTLAPEASTPLPSSSMWKRRFSSRIIEPAE 414
           C+T+  S IN   +KF +   KGFN F   F  + + S    + S    +FS    E +E
Sbjct: 374 CNTEEESRINPSTSKFLKQLNKGFNGFTKPFRKSRKQSKNRKNKSSVATQFS----EESE 429

Query: 413 GLAHAVSTS 387
            +A ++++S
Sbjct: 430 DIADSITSS 438


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 331 ELKKLLNKDVTFLNDCIGPEVETACANPSAGSIILLENLRFHI 459
           E   LL    T +   + P++     NP   ++++L NL+  +
Sbjct: 145 ETDALLKNSATSIYKAVFPDLVQVLPNPEINNLVILRNLKLEV 187


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -3

Query: 506 AFTLAPEASTPLPSSSMWKRRFSSRIIEPAEGLAHAVSTSGPMQSFKNVTSLFSNFFS 333
           +F +  EA    PSSS +   F S +         + STS  +  F+NVT L S  FS
Sbjct: 525 SFAMEEEADVSQPSSSSFTLSFPSALTSSKV----SSSTSHLLTRFRNVTLLGSGEFS 578


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 309 VLEIYLAIRSTQMRHKYNYLAPLSK 235
           VL+IY    S +  H YNY+  LS+
Sbjct: 75  VLDIYKPADSLKWTHHYNYITQLSE 99


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 334 LKKLLNKDVTFLNDCIGPEVETACANPSAGSIILLENLRFHIEEEGKGVD 483
           LK L   +  +  + +GPE  T     +   ++  E LR+H +  G+  D
Sbjct: 73  LKSLQTINYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFD 122


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 291  AIRSTQMRHKYNYLAPLSKAYLTESKAATMRWLFVITPSLSGTLKST 151
            A  ST ++H++  L  L   YLT+  A      +  TP  SG L  T
Sbjct: 3839 ANHSTSLKHEFGTLNTLLSKYLTDQDAED---CYPATPIQSGLLLET 3882


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 593  SMCSTKSIINIDITKFSQACPKGFNFFWT 507
            S C T + +N  +T+  Q C +GF+ F T
Sbjct: 959  SACPTLTPVNTVLTRQQQECFRGFSSFAT 987


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 276 QMRHKYNYLAPLSKAYLTESKAATMRW 196
           ++RH +NY+   +K+    S  A++ W
Sbjct: 142 RVRHPHNYMVKFAKSLKFSSSTASIAW 168


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 MRWLFVITPSLSGTLKSTRIRTLLPVKLSASIL 106
           M++L + TP      +STR R LL V LS  IL
Sbjct: 426 MKYLQIDTPESKEYPRSTRPRALLIVALSQLIL 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,196
Number of Sequences: 5004
Number of extensions: 43262
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)