Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0566
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 78 6e-15
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 77 1e-14
05_05_0343 - 24234026-24234235,24234254-24234502,24234642-242349... 68 7e-12
01_06_1020 + 33878391-33878582,33879194-33879271,33879363-338795... 66 2e-11
10_01_0265 + 2808271-2809064,2809624-2809807 29 2.2
05_05_0091 + 22319411-22320901 29 2.2
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 29 3.9
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 29 3.9
04_03_0359 - 14864750-14864998,14865122-14865345,14867358-148674... 28 6.8
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 77.8 bits (183), Expect = 6e-15
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = +1
Query: 256 VVLMSHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIIL 435
V+L SHLGRP G V KY+LKP+ L +LL DV NDCIG EVE A G ++L
Sbjct: 59 VILASHLGRPKG-VTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVEKLAAALPEGGVLL 117
Query: 436 LENLRFHIEEE 468
LEN+RF+ EEE
Sbjct: 118 LENVRFYKEEE 128
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 NLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAALDSVKYALDKGAK 253
+L GK+V +R D NVPL + IT++ RI A++ +VK+ L+KGAK
Sbjct: 14 DLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAK 58
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 528 FRASLRKLGDVYINDAFGTAHRAHSSMVG 614
F L + D+Y+NDAFGTAHRAH+S G
Sbjct: 134 FAKKLAAVADLYVNDAFGTAHRAHASTEG 162
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/71 (53%), Positives = 47/71 (66%)
Frame = +1
Query: 256 VVLMSHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIIL 435
V+L SHLGRP G V KY+LKP+ L +LL DV NDCIG EV+ A G ++L
Sbjct: 59 VILASHLGRPKG-VTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVQKLAATLPDGGVLL 117
Query: 436 LENLRFHIEEE 468
LEN+RF+ EEE
Sbjct: 118 LENVRFYKEEE 128
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 NLTGKRVLMRVDFNVPLKEG-VITNNQRIVAALDSVKYALDKGAK 253
+L GK+V +R D NVPL + IT++ RI A++ ++K+ + KGAK
Sbjct: 14 DLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGKGAK 58
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/29 (58%), Positives = 21/29 (72%)
Frame = +3
Query: 528 FRASLRKLGDVYINDAFGTAHRAHSSMVG 614
F L + D+Y+NDAFGTAHRAH+S G
Sbjct: 134 FANKLASVADLYVNDAFGTAHRAHASTEG 162
>05_05_0343 -
24234026-24234235,24234254-24234502,24234642-24234959,
24235111-24235371,24235457-24235534,24235834-24236262
Length = 514
Score = 67.7 bits (158), Expect = 7e-12
Identities = 35/71 (49%), Positives = 46/71 (64%)
Frame = +1
Query: 256 VVLMSHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIIL 435
V+L SHLGRP G V K++L P+ L +LL VT D IGP+VE + GS++L
Sbjct: 137 VILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVTKAEDVIGPDVEKLVSELPNGSVLL 195
Query: 436 LENLRFHIEEE 468
LEN+RF+ EEE
Sbjct: 196 LENVRFYKEEE 206
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +2
Query: 41 RQKASKNQKEFNFLLRMALNKLS-IDALNLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAA 214
RQ AS + + + MA + + A +L GKRV +R D NVPL + IT++ R+ AA
Sbjct: 64 RQAASSSSRGTRAVATMAKKSVGDLTAADLEGKRVFVRADLNVPLDDNQNITDDTRVRAA 123
Query: 215 LDSVKYALDKGAK 253
+ +++Y + GAK
Sbjct: 124 IPTIQYLIKNGAK 136
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3
Query: 528 FRASLRKLGDVYINDAFGTAHRAHSSMVG 614
F L L D+Y+NDAFGTAHRAH+S G
Sbjct: 212 FAKKLASLADLYVNDAFGTAHRAHASTEG 240
>01_06_1020 +
33878391-33878582,33879194-33879271,33879363-33879524,
33879789-33880106,33880477-33880671
Length = 314
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +1
Query: 256 VVLMSHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIIL 435
V+L SHLGRP G + K++L P+ L +LL V +D IGPEVE + + GS++L
Sbjct: 58 VILCSHLGRPKG-ITPKFSLAPLVPRLSELLGIQVQKADDVIGPEVEKSVSVLPNGSVLL 116
Query: 436 LENLRFHIEEE 468
LEN+RF+ EEE
Sbjct: 117 LENVRFYKEEE 127
Score = 47.6 bits (108), Expect = 8e-06
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = +2
Query: 116 ALNLTGKRVLMRVDFNVPLKEGV-ITNNQRIVAALDSVKYALDKGAK*LYLC 268
A +L GKRVL+R D NVPL IT++ R++AA+ ++K+ + GAK + LC
Sbjct: 11 AADLEGKRVLLRADLNVPLDASQNITDDTRVIAAIPTIKHLIGNGAK-VILC 61
>10_01_0265 + 2808271-2809064,2809624-2809807
Length = 325
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 509 TAFTLAPEASTPLPSSSMWKRRFSSRIIEPAEG 411
T F LAP AS +P+ S W R R + A+G
Sbjct: 63 TGFALAPGASQAVPAPSGWSGRMWGRTLCAADG 95
>05_05_0091 + 22319411-22320901
Length = 496
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = -3
Query: 491 PEASTPLPSSSMWKRRFSSRIIEPAEGLAHAVSTSGPMQSFKNVTSLFSNFFSSSATGLR 312
P PLP + R S ++ P A S SGP+Q + L S+S +R
Sbjct: 245 PGLPPPLPPAEAVHSRLSKLLLHPMSAAAQPRSLSGPIQ--RRDVPLRIEMSSNSCPIIR 302
Query: 311 VYLRFTWPSGLPKCD 267
+ + W + P D
Sbjct: 303 SHCQQPWQTSPPGVD 317
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 331 ELKKLLNKDVTFLNDCIGPEVETACANPSAGSIILLENLRF 453
EL+K+LN+D++ L +G +T G I+L+ +LR+
Sbjct: 92 ELEKMLNQDLSRLYPELGNFFQTTICQSMLGRILLVWSLRY 132
>03_05_0710 +
27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 259 VLMSHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCI 381
V M+H + ++ L +AEE KKLL KD T + +
Sbjct: 698 VKMAHSVEAKADTSHEHVLASLAEETKKLLKKDTTVFSSVL 738
>04_03_0359 -
14864750-14864998,14865122-14865345,14867358-14867475,
14867586-14867960,14869257-14869673
Length = 460
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 168 GTLKSTRIRTLLPVKLSASI 109
G L S R+R LLP+KLSA++
Sbjct: 160 GHLVSKRVRDLLPIKLSANL 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,996
Number of Sequences: 37544
Number of extensions: 261170
Number of successful extensions: 619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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