Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0566
(616 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_86| Best HMM Match : PGK (HMM E-Value=0) 140 8e-34
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.080
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_46991| Best HMM Match : PE (HMM E-Value=2.6) 30 1.7
SB_59566| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_34635| Best HMM Match : PE (HMM E-Value=0.82) 29 3.0
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_20251| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_86| Best HMM Match : PGK (HMM E-Value=0)
Length = 445
Score = 140 bits (339), Expect = 8e-34
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = +1
Query: 256 VVLMSHLGRPDGQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIIL 435
VVLMSHLGRPDG+V KY++ PVA ELKKLL KDV FL C+GPEV+ ACANP+ GS+IL
Sbjct: 57 VVLMSHLGRPDGRVQEKYSMAPVANELKKLLGKDVKFLPSCVGPEVQAACANPAPGSVIL 116
Query: 436 LENLRFHIEEEGKGVDASGAKVKAVQKKLK 525
LENLRFH+EEEGKGVDA G KVKA +K
Sbjct: 117 LENLRFHLEEEGKGVDADGNKVKANSDAVK 146
Score = 77.8 bits (183), Expect = 7e-15
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = +2
Query: 89 MALNKLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAK 253
MALNKL I +++ KRVLMRVDFNVPLK ITNNQRIVAAL S+K+ L+KGAK
Sbjct: 1 MALNKLGIADVDVKDKRVLMRVDFNVPLKGKEITNNQRIVAALPSIKHCLEKGAK 55
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +3
Query: 513 EKVKAFRASLRKLGDVYINDAFGTAHRAHSSMVG 614
+ VK FR SL LGD+Y+NDAFGTAHRAHSSMVG
Sbjct: 143 DAVKVFRESLATLGDIYVNDAFGTAHRAHSSMVG 176
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 34.3 bits (75), Expect = 0.080
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 333 LFSDWFEGVLEIYLAIRSTQMRH-KYNYLAPLS-KAYLTESKAATMRWLFVITPSLSGTL 160
++S +E + E+ I T + H +YNY+A S K Y + ++ F TP GTL
Sbjct: 466 VYSLLYEDIDEVLFIITKTLVDHLEYNYVAKWSWKTYFLDLPITSLAMSFTATPFSCGTL 525
Query: 159 KSTRIRTLLPVKLSASILNLFKAILS 82
R L V L+ + + K +L+
Sbjct: 526 CDELSRLWLLVVLNPKMSHRKKEVLT 551
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 289 GQVNLKYTLKPVAEELKKLLNKDVTFLNDCIGPEVETACANPSAGSIILLENL 447
G N L+ + LK+L N+D + LND + E++T S +++L E+L
Sbjct: 1729 GTANQSMLLEEAEKILKELQNRDFSALNDTVNMEMKTIRGMQSLATMLLNESL 1781
>SB_46991| Best HMM Match : PE (HMM E-Value=2.6)
Length = 270
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = -3
Query: 557 ITKFSQACPKGFNFFWTAFTLAPEASTPLPSSSMWKRRFSSRIIEPAEGLAHAVSTSGPM 378
+TK + A K F F AF + P P + K + S + EG+ S P
Sbjct: 95 LTKVATAAAKSFGVFGAAFGFVASLTAPSPDDILKKTEWRSHV----EGIHSKSKVSYPY 150
Query: 377 QSFKNVTSL--FSNFFSSSATGLR 312
+ K SL F +F S+ LR
Sbjct: 151 DTKKLEASLIVFRDFASTYLYALR 174
>SB_59566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 38 LRQKASKNQKEFNFLLRMALNKLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAAL 217
L + N+ LL + L++D + LT RVL+ +D + + V+ R++ L
Sbjct: 55 LSNEVDNNKPSKRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLHRVLLTL 114
Query: 218 DSVKYALDK 244
D V LD+
Sbjct: 115 DRVLLTLDR 123
>SB_34635| Best HMM Match : PE (HMM E-Value=0.82)
Length = 436
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 560 DITKFSQACPKGFNFFWTAFTLAPEASTPLPSSSMWK 450
DITK + A K F F AF A ++P P + K
Sbjct: 94 DITKVAAAAAKSFGVFGAAFGFAASLTSPSPDDILEK 130
>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1892
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 518 FFWTAFTLAPEASTPLPSSSMWKRRFSSRIIE 423
F+ T +L S+PL S + W+ RFS R ++
Sbjct: 924 FYTTGNSLYVNVSSPLSSVAKWEFRFSYRAVQ 955
>SB_20251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -3
Query: 533 PKGFNFFWTAFT-LAPEASTPLPSSSMW--KRRFSSRIIEPAEGLAHAVSTSGPMQSFKN 363
P+G +F A+ L+ +A T S W K++FS + E + A TSG F
Sbjct: 37 PRGLSFTIAAWVKLSKDAVTRKSIISDWGSKKQFSFHVYETKLRIQRAAITSGHHVFFTT 96
Query: 362 VTSL 351
TSL
Sbjct: 97 TTSL 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,679,732
Number of Sequences: 59808
Number of extensions: 300993
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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