Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0565
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 29 0.75
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.0
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 4.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 4.0
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 7.0
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 25 7.0
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 9.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 9.2
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 25 9.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.2
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.7 bits (61), Expect = 0.75
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 FEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 250
F F+ S +V+ + E +V+++K+ QPR N N IE +N DA
Sbjct: 637 FSFETSPTVFQTSPEEDKENVNNIKISQPR-NSLQTNGYIEGMANNVLDA 685
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +2
Query: 47 GVKITDVKVDKLTTFFENFEFDASNSVYFSKEEIKNNH--VHDVKVRQPRLNHSPFNVNI 220
G+ I V V ++ + ++ SNS + N+ + + P HSP N+
Sbjct: 113 GLGIDKVAVGEVDSHLKSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172
Query: 221 EVDSNVASDAVAKSSWLPNT 280
+ + + S K+ W P T
Sbjct: 173 PIPTFLHSPVSEKAEWQPPT 192
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 161 VHDVKVRQPRLNHSPFNVNIEVDSNVASDAVAKS 262
+ DV + + S FNV I SNV D VA S
Sbjct: 85 IFDVSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 29 DKLYFDGVKITDVKVDKLTTFFENFEFD 112
D+L FD +K + V L F +FEFD
Sbjct: 283 DRLSFDNIKPALICVGHLLQFCSSFEFD 310
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +1
Query: 256 KIFLAPKYDDNGIPLTLEDNWMKFF----ELDWFTTKLTAGQNKI 378
+IFL P +G+ +D W+ F+ E DW G N +
Sbjct: 339 RIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 530 RWIPIPALCFRLSIRQQRART 592
R++P P +C R S+ Q+ A T
Sbjct: 249 RYVPAPPVCIRPSVAQEGATT 269
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 390 RIADNLVLTSGEFSCEPV 337
RI D LV+T+G+ S EP+
Sbjct: 59 RIEDTLVVTAGQTSSEPI 76
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 608 IRKEPKSLPFVVEWIDEN 555
+R++ K LP + +WIDEN
Sbjct: 239 LRQKNKYLPKIKKWIDEN 256
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 325 FFELDWFTTKLTAGQNKIIRNS 390
F LDWFT + QN+++R S
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRS 675
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 9.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 501 RHVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 349
R + EL + R FS + H FS W +F + FI D +L+ E S
Sbjct: 273 RSLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 628 LIVKNKRFERSPSPCPLLSNG*TKTKSWNGNPPSVPLGSMVF 503
L VKN E++P+ L NG TK + P + GS+ F
Sbjct: 606 LEVKNGTSEKNPTRIVALENGNTKWMDYLPRPVILVTGSIHF 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,551
Number of Sequences: 5004
Number of extensions: 51644
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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