Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0565
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    32   0.44 
01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     32   0.44 
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059...    30   1.8  
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289...    30   1.8  
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   2.4  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   7.2  

>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +2

Query: 74  DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVA---S 244
           DKL    E F     +++  S EEIK+ ++ ++  +  +  H P N   E + N A   S
Sbjct: 499 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKMNKTGHVPINPPDETEKNSALTDS 558

Query: 245 DAVAKSSWLPN 277
             V   S+ PN
Sbjct: 559 YQVIPDSYSPN 569


>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = -1

Query: 531 LQYL*AAWSFRHVTELFRHIKRYFSFVEHLH-------NFSHWHGVFFKYDKFIRIADNL 373
           LQ++ +    R +  + R  +R+   +E L        +F HW     K +KF R  DNL
Sbjct: 16  LQHILSFSRIRAIVRMRRLSRRWMRVIECLQFICLDYRDFKHW-----KVEKFARFVDNL 70

Query: 372 VLTSGEFSCEPVQLEEFHPVVL*C 301
           +L   +      QL  FH + L C
Sbjct: 71  LLIRSKVDLHTFQLYWFHYLPLNC 94


>08_02_1240 +
           25504789-25504794,25505421-25505555,25505854-25505964,
           25506091-25506183,25506264-25506884,25506970-25507143,
           25507239-25507464,25507560-25507651,25507744-25507842,
           25507936-25507984,25508071-25508124,25508312-25508484,
           25508561-25508632,25508713-25508808,25509032-25509048,
           25509704-25509875,25509973-25510071,25510381-25510484,
           25510940-25511126,25511212-25511220
          Length = 862

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 74  DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 250
           DKL    E F     +++  S EEIK+ ++ ++  +  +  H P N   E + N A  A
Sbjct: 496 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 554


>08_02_0747 -
           20728073-20728081,20728167-20728353,20728810-20728913,
           20729008-20729139,20729583-20729810,20730263-20730358,
           20730440-20730511,20730588-20730760,20730947-20731000,
           20731086-20731134,20731228-20731326,20731420-20731511,
           20731607-20731832,20731927-20732100,20732186-20732809,
           20732890-20733033,20733108-20733218,20733516-20733650,
           20733963-20733989
          Length = 911

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 74  DKLTTFFENFEFDASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDA 250
           DKL    E F     +++  S EEIK+ ++ ++  +  +  H P N   E + N A  A
Sbjct: 521 DKLPIPNEEFNPVNKSTILNSSEEIKHINIDEIMTKLNKTGHVPINPPDETEKNSALTA 579


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 334 LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 447
           +D F T +T    KI RNS +F     DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +1

Query: 382 RNSNEFVIFKEDSVPMTEIMKMLD 453
           RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,594
Number of Sequences: 37544
Number of extensions: 334144
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)