Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0565
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 30 1.4
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023) 30 1.8
SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 30 1.8
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 30 1.8
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 30 1.8
SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 30 1.8
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 30 1.8
SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2) 29 2.4
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_19686| Best HMM Match : SCAN (HMM E-Value=3.2) 29 4.2
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_20928| Best HMM Match : NHL (HMM E-Value=0) 27 9.7
SB_57058| Best HMM Match : ROKNT (HMM E-Value=8) 27 9.7
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 27 9.7
SB_16103| Best HMM Match : RVP (HMM E-Value=0.027) 27 9.7
SB_6139| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4e-06) 27 9.7
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 RCCKIFLAPKYDDNGIPLTL-EDNWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+CC+ A Y +G + L +W++ F+LDW + KL G+N + + E
Sbjct: 379 KCCE---AKMYVVDGPRVALFVRSWLRLFKLDWPSIKLVQGKNTALSDLTE 426
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 219 SWLRLFKLDWPSMKLVEGKNTALSDLTE 246
>SB_36107| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
Length = 425
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 377 SWLRLFKLDWPSIKLVQGKNTALSDLTE 404
>SB_24180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 293 SWLRLFKLDWPSIKLVQGKNTALSDLTE 320
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 76 SWLRLFKLDWPSIKLVQGKNTALSDLTE 103
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 287 SWLRLFKLDWPSIKLVQGKNTALSDLTE 314
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 164 SWLRLFKLDWPSIKLVQGKNTALSDLTE 191
>SB_32803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 15 SWLRLFKLDWPSIKLVQGKNTALSDLTE 42
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 467 SWLRLFKLDWPSIKLVQGKNTALSDLTE 494
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 1117 SWLRLFKLDWPSIKLVQGKNTALSDLTE 1144
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 143 SWLRLFKLDWPSMKLVEGKNTALSDLTE 170
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL G+N + + E
Sbjct: 176 SWLRLFKLDWPSIKLVQGKNTALSDLTE 203
>SB_20046| Best HMM Match : UPAR_LY6 (HMM E-Value=3.2)
Length = 419
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 247 RCCKIFLAPKYDDNGIPLTL-EDNWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+CC+ A Y +G + L +W++ F+LDW + KL G+N + + E
Sbjct: 329 KCCE---AKMYVVDGPRVALFVRSWLRLFKLDWPSIKLVQGKNIALSDLTE 376
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 633 GGLLSRTKD-SKGAQVLALCCRMDRRKQRAGMG 538
GGL T S+G Q++ LC R DRRK + +G
Sbjct: 3412 GGLAKATGGASRGWQIIHLCGRSDRRKNKLLLG 3444
>SB_19686| Best HMM Match : SCAN (HMM E-Value=3.2)
Length = 609
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 113 ASNSVYFSKEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVAKSSWLP 274
A+ + S I+ + +DV+ R ++ SP N N E S++ + S +LP
Sbjct: 76 ATGEILLSTGRIRTHIAYDVESRCDTVSDSPQNKNAEESSSLEKFTLPSSPFLP 129
>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+L+W + KL G+N + + E
Sbjct: 344 SWLRLFKLEWPSIKLVQGKNTALSDLTE 371
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+L+W + KL G+N + + E
Sbjct: 827 SWLRLFKLEWPSIKLVQGKNTALSDLTE 854
>SB_20928| Best HMM Match : NHL (HMM E-Value=0)
Length = 795
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 110 DASNSVYFS--KEEIKNNHVHDVKVRQPRLNHSPFNVNIEVDSN 235
D N VY + +++ HV V +R + SPF V I+ N
Sbjct: 467 DRQNGVYIVTYRPQVEGEHVISVTIRGQHIQDSPFRVAIKKGRN 510
>SB_57058| Best HMM Match : ROKNT (HMM E-Value=8)
Length = 200
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 343 FTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVP 468
+ K TA +K ++NE +E+ +P+ + + D+ VP
Sbjct: 142 YNDKSTAHNDKRTTDNNESTAVREEKIPLPCVASLFDQTAVP 183
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL +N + + E
Sbjct: 365 SWLRLFKLDWPSIKLVQSKNTALSDLTE 392
>SB_16103| Best HMM Match : RVP (HMM E-Value=0.027)
Length = 274
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 313 NWMKFFELDWFTTKLTAGQNKIIRNSNE 396
+W++ F+LDW + KL +N + + E
Sbjct: 135 SWLRLFKLDWPSIKLVQSKNTALSDLTE 162
>SB_6139| Best HMM Match : Exo_endo_phos (HMM E-Value=1.4e-06)
Length = 400
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 606 SKGAQVLALCCRMDRRKQRAGMG 538
S+G Q++ LC R DRRK++ +G
Sbjct: 36 SRGWQIIHLCGRSDRRKKKLLLG 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,971
Number of Sequences: 59808
Number of extensions: 389481
Number of successful extensions: 947
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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