Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0565
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    33   0.13 
Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U29379-4|AAF99980.2|  415|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    27   8.6  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    27   8.6  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    27   8.6  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 468 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 307
           +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261


>Z83125-7|CAB05619.1|  407|Caenorhabditis elegans Hypothetical
           protein T15D6.9 protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 20  YTQDKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSK 139
           Y   K    G+ ++   +DKL    ENFEF A N+  + K
Sbjct: 119 YPHHKYILHGLNLSAAYIDKLPRNDENFEFRAFNTSTYPK 158


>U29379-4|AAF99980.2|  415|Caenorhabditis elegans Hypothetical
           protein K05B2.4 protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 5   TSLKPYTQDKLYFDGVKITDVKVDKLTTFFENFEFDASNSVYFSKEE 145
           TSL PYT D++ F G+      V  LTT F+  +   S +  F+ +E
Sbjct: 205 TSL-PYTNDRIGFQGISFGGTLVMFLTTRFKQIKAACSINGSFTMDE 250


>Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 361 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 480
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 361 AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 480
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical
           protein W02D9.3 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 586 CPLLSNG*TKTKSWNGNPPSVPLGSMVF*ACNRTLPTYQKVLFLRRA 446
           CPLLS     + S +G   S P+ +  F   N+T  TY++ L + R+
Sbjct: 245 CPLLSPEPATSSSTSGLQYSGPIFTPEFMTYNKTRDTYRRQLAIERS 291


>Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical
           protein T18D3.3 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 125 VYFSKEEIKN-NHVHDVKVRQPRLNHSPFNVNIEVDSNVASDAVAKSS 265
           V+ S E+I+    VHD+++    ++    +V++E+D+N  S ++ + +
Sbjct: 278 VFSSLEDIEGVKKVHDLRIWSLTMDKIALSVHLEIDANSQSQSILRET 325


>Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical
           protein T24D5.1 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 303 CERYSVVIVFGSQEDFATASLATLESTSMLTLKG 202
           CE+  VVI FG Q++F     + L + S+ ++ G
Sbjct: 5   CEQKKVVIAFGIQQNFEDLDNSVLSAQSLQSVVG 38


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 393 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 259
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 364 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 412


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 393 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 259
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 393 IRIADNLVLTSGEFSCEPVQLEEFHPV----VL*CERYSVVIVFGSQED 259
           IR+++ L LT G   C    LEE HP     +   + YS  ++FG   D
Sbjct: 380 IRVSEILNLTGGVEQCAARALEEMHPTRVFNLSSFDPYSSNVIFGYYRD 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,104,058
Number of Sequences: 27780
Number of extensions: 292782
Number of successful extensions: 828
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)