Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0563
         (591 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   3.4  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   5.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.8  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   7.8  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 3   RSWLELESDPGLFTLLLEDFG 65
           R W+E  +DPG   L L  +G
Sbjct: 248 RGWIERGADPGKLVLGLGVYG 268


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 281 VKHEWRNCWYHLLCNKNII 225
           + HE RN ++H+    N+I
Sbjct: 323 ILHELRNNYFHMDLENNVI 341


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 189 QIESFXRDEETINNIFVAQQMV 254
           Q+ES   DEET   +F   ++V
Sbjct: 429 QVESEEEDEETSTTVFSNVEVV 450


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 314 NEDLDSLVKWKVKHEWRNCWYHLLCNKNIIDGLLI 210
           ++ L  +   K+   + +  YH+L N+N +D  LI
Sbjct: 128 SDKLSKIQTLKLAARYIDFLYHVLSNENALDVDLI 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,758
Number of Sequences: 336
Number of extensions: 3640
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)