Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0563
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    58   1e-09
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    29   0.67 
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    27   2.7  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    27   2.7  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.6  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    26   4.7  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   4.7  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   6.2  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   6.2  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   6.2  

>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
 Frame = +3

Query: 6   SWLELESDPGLFTLLLEDFGVKGVQVEEIY--DLHKPLESP-VYGFIFLFRWIEERRSRR 176
           SW  +ESD G+FT L+E+ GVK V+V+E+Y  D+    + P +YG IFLF+W  +     
Sbjct: 2   SWTTIESDAGVFTDLIENLGVKDVEVDELYSLDVDSLRQFPDIYGIIFLFKWNSK----- 56

Query: 177 KFVEQIESFXRDEETINNIFVAQQMV 254
             V++ +    D ++++NIF A+Q++
Sbjct: 57  --VDKPDG-TMDYDSMDNIFFAKQVI 79



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = +2

Query: 257 NSCATHALLSILLN-CPNLHLGETLSRLKHHTVGMNPENKGWAIGNTPELACAHNSHA 427
           N+CAT ALLS+LLN    + LG TLS  K  +  + PE KG A+GN+  + C HNS A
Sbjct: 81  NACATQALLSVLLNHSDEIDLGTTLSEFKDFSKTLPPELKGEALGNSEHIRCCHNSFA 138


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 148 LNKKINPYTGLSKGLC 101
           L+ K+NPYTG S GLC
Sbjct: 123 LDLKLNPYTGTSLGLC 138


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 186 EQIESFXRDEETINNIFVAQQMVPTVAPLMLYF 284
           E+IE   RD+ T+++  + Q   P   P +LYF
Sbjct: 63  ERIELRTRDKVTLDSYLMLQSESPESRPTLLYF 95


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 263 CATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGW--AIGNTPE 400
           C+T  L S+  N  ++H+  TL +L+       P N+GW  A+G  PE
Sbjct: 278 CST-LLASLYSNEFDMHILPTLLKLQETMTRDYPVNQGWKQAMGRYPE 324


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -3

Query: 289 NGK*SMSGATVGTICCATKILLMVSSSRXKLSICSTNFRLDLRSSI-HLNKKINPYTGLS 113
           N   S+SG +V      T   +  +SS    +  S++     +SS+  +N +I  Y GLS
Sbjct: 141 NSTGSVSGGSVYPTNSTTNSSISWNSSTSAATNTSSSSSSSSQSSVVSVNSEIFSYFGLS 200

Query: 112 KGLCRS*ISSTCTPLTPKSSNSKV 41
           +       S  C   TP+++ S V
Sbjct: 201 QQYVNYSTSRLCVVGTPRANMSTV 224


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 413 HNSHAIPXARKKTDKNAGVSTGSFTGXAYHFGAWYQSMDXCLN*MVLNHI 562
           H + A+  A+KK+D        S  G AY+    YQS   C     L H+
Sbjct: 61  HANWALLLAKKKSDTGLIGYCQSLRGLAYYLLEQYQSSAICFG-FALKHL 109


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 130 PYTGLSKGLCRS*ISSTCTPLTPKSSNSKVKRPGSLSNSS 11
           P TG +K    + + ST  P+TPK  +S   + GS S+ S
Sbjct: 637 PETGPNKPSKNNILKSTQVPVTPKQKSSTANK-GSTSSPS 675


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 461 AGVSTGSFTGXAYHFGAWYQSMDXC 535
           A     +F G  Y  GAWY+  + C
Sbjct: 131 AVAEASTFAGTHYILGAWYKESELC 155


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 293 LNCPNLHLGETLSRLKHHTVGMNPENKGW-AIGNTPELACAHNSHAI 430
           L+CP++ +     R+  +T+ M+P N  + AIG T   A  ++   +
Sbjct: 182 LDCPSILVNYNPYRINLYTITMSPSNPYYFAIGGTHPYAFLYDRRMV 228


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 220 PSIIFLLHSKWYQQLRHSCFTFHFTKLSKS 309
           PSI FL  S    Q   S F FHF+KL K+
Sbjct: 315 PSISFLRSS----QASQSLFNFHFSKLYKA 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,920
Number of Sequences: 5004
Number of extensions: 56400
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)