Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0563
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...    68   6e-12
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    63   1e-10
01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909     30   1.6  
01_01_0093 + 727977-729854,729877-729930                               30   1.6  
05_01_0208 - 1501819-1502100,1506048-1506381,1507052-1507542           28   6.4  
03_02_0680 + 10351625-10351824,10352224-10352266,10352477-103525...    27   8.5  

>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
 Frame = +3

Query: 6   SWLELESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLES---PVYGFIFLFRWIEERRSRR 176
           SW  +ESDPG+FT L+++  VKGVQVEE+Y L     S   PVYG IFLF+W+   +  R
Sbjct: 2   SWCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSISELRPVYGLIFLFKWMAGEKDER 61

Query: 177 KFVEQIESFXRDEETINNIFVAQQMVP 257
             V         ++   N+F A Q++P
Sbjct: 62  PVV---------KDPNPNLFFASQVIP 79



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 29/59 (49%), Positives = 37/59 (62%)
 Frame = +2

Query: 257 NSCATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGWAIGNTPELACAHNSHAIP 433
           N+CAT A+LSIL+N P + +G  LS LK  T    P+ KG AI N+  +  AHNS A P
Sbjct: 80  NACATQAILSILMNRPEIDIGPELSNLKEFTGAFAPDMKGLAINNSDSIRTAHNSFARP 138


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = +3

Query: 6   SWLELESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLES---PVYGFIFLFRWIEERRSRR 176
           SW  +E+DPG+FT LL+   +KG+QV+E+Y L     +   PVYG I L++W    +  R
Sbjct: 56  SWAAIENDPGIFTELLQQMQLKGLQVDELYSLDLDALNDLQPVYGLIVLYKWQPPEKDER 115

Query: 177 KFVEQIESFXRDEETINNIFVAQQMV 254
              + I +    ++ INN    Q +V
Sbjct: 116 PIKDPIPNLFFAKQIINNACATQAIV 141



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 26/59 (44%), Positives = 36/59 (61%)
 Frame = +2

Query: 257 NSCATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGWAIGNTPELACAHNSHAIP 433
           N+CAT A++S+LLN P + L E L +LK     + P+ KG AI N+  +  A NS A P
Sbjct: 133 NACATQAIVSVLLNSPGITLSEELKKLKEFAKDLPPDLKGLAIVNSESIRLASNSFARP 191


>01_06_1237 + 35630146-35630642,35632617-35632950,35633583-35633909
          Length = 385

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 12  LELESDPGLFTLLLEDFGVKGVQV 83
           L   SDPG+ T+LL D  V+G+QV
Sbjct: 228 LSAHSDPGILTVLLADDHVRGLQV 251


>01_01_0093 + 727977-729854,729877-729930
          Length = 643

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 233 FCCTANGTNSC-ATHALLSILLNCPNLH 313
           +CCT NGTN+C  T   L  +  CP+ +
Sbjct: 192 YCCTGNGTNTCEPTTYSLPFVRMCPDAY 219


>05_01_0208 - 1501819-1502100,1506048-1506381,1507052-1507542
          Length = 368

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 12  LELESDPGLFTLLLEDFGVKGVQV 83
           L   SDPG  T+LL D  VKG+QV
Sbjct: 227 LSSHSDPGGMTVLLVDDRVKGLQV 250


>03_02_0680 +
           10351625-10351824,10352224-10352266,10352477-10352530,
           10353122-10353185,10353385-10353441,10353516-10353610,
           10353836-10353924,10354022-10354100,10355193-10355240,
           10356675-10356767
          Length = 273

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 244 CATKILLMVSSSRXKLSICSTNFRLDLRSSIHLNKKINPYTGL 116
           C T+   +VS++R    +C+T  R   +S I L   INP  G+
Sbjct: 107 CGTQCSALVSNNRGGYDVCTTIGRAS-KSHISLIDDINPQKGV 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,158
Number of Sequences: 37544
Number of extensions: 339320
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)