Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0563
(591 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0) 97 7e-21
SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10) 33 0.17
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062) 30 1.6
SB_284| Best HMM Match : rve (HMM E-Value=0.001) 30 1.6
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_12726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_52085| Best HMM Match : TIL (HMM E-Value=2.5) 28 5.0
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063) 28 5.0
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21) 28 6.6
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_34607| Best HMM Match : zf-CXXC (HMM E-Value=7) 27 8.7
>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
Length = 537
Score = 97.5 bits (232), Expect = 7e-21
Identities = 44/65 (67%), Positives = 52/65 (80%)
Frame = +3
Query: 63 GVKGVQVEEIYDLHKPLESPVYGFIFLFRWIEERRSRRKFVEQIESFXRDEETINNIFVA 242
GVKG QVEEIYDL KP++ VYGFIFLF+WIEERRSRRK ESF +EE +N+IF A
Sbjct: 7 GVKGAQVEEIYDLSKPMKGHVYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFA 66
Query: 243 QQMVP 257
QQ++P
Sbjct: 67 QQVIP 71
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +2
Query: 257 NSCATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGWAIGNTPELACAHNSHAIPX 436
NSCATHALLS+LLNCP++ LGE +S+LK + NPENKG+ IGN PELA +HN A P
Sbjct: 72 NSCATHALLSVLLNCPHIDLGENVSKLKDFSKNFNPENKGYVIGNLPELAMSHNKFARPE 131
Query: 437 ARKKTDKNAGVSTGSFTGXAYHF 505
+ +K +S+ A+HF
Sbjct: 132 PKLLPEKTNSISSARAL-EAFHF 153
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 502 FWCLVPINGHXLELDGLKPYP 564
F VPI G ELDGLKPYP
Sbjct: 153 FVSYVPIKGRLFELDGLKPYP 173
>SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)
Length = 517
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 166 LRSSIHLNKKINPYTGLSKGLCRS*ISSTCTPLTPKSSNSKVKRP 32
+R S+HLN ++PYT + S S+T + + K+SN+ K+P
Sbjct: 258 IRKSVHLNDYMSPYTYSFRNWPDSQTSTTASNINQKNSNTCSKQP 302
>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
Length = 1082
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 511 STKMVCXTCKTASR-NSSIFVCLFACXW 431
+ K VC C++ R N S+F+C F+ W
Sbjct: 1010 AVKRVCRICQSTGRQNLSVFICQFSVRW 1037
>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
Length = 1201
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 406 LCPQLTCHTXSTQKDRQKCWSFYWQFYRXSIPFWCL-VPINGHXLELDGLKPYP 564
L PQLT +D +C + R + C V GH + DGLKP P
Sbjct: 532 LLPQLTNAKVQVDEDAVRCRQKGIKLNREKLKLRCAEVKFMGHVVSTDGLKPDP 585
>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1622
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 402 WLVPTTHMPYXKHAKRQTKMLEFLLAVLQVXHTILVLGTNQWTXA*TRW 548
WL P TH Y K K +T+ FLL + + IL WT A T+W
Sbjct: 656 WL-PDTHFEYEKKPKDRTRDHVFLLKLWR--DAILSQQPAPWTCAATQW 701
>SB_12726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 374 GWAIGNTPELACAHNSHAIPXARKKTD-KNAGVSTGSFTGXAYHFGAWYQS 523
GW IG+ E C H S A+ ++ D +N GV+ + F +W S
Sbjct: 40 GWVIGDPLESTCRHASLALAVVLQRRDWENPGVTQLNRLAAHPPFASWRNS 90
>SB_52085| Best HMM Match : TIL (HMM E-Value=2.5)
Length = 234
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 374 GWAIGNTPELACAHNSHAIPXARKKTD-KNAGVSTGSFTGXAYHFGAWYQS 523
GW +G+ E C H S A+ ++ D +N GV+ + F +W S
Sbjct: 135 GWPVGDPLESTCRHASLALAVVLQRRDWENPGVTQLNRLAAHPPFASWRNS 185
>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
Length = 773
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 527 PLIGTKHQNGMLHL*NCQ*KLQHFCLSFCVLXVWHVSCGHKPTQVYFLLPILCFQ 363
P T+ Q +L L + L + CV +HV C H + L+PI F+
Sbjct: 709 PTSTTRMQRALLSLHQTEGALHDGYVKVCVTHGFHVECAHAYSWNGLLIPIAIFR 763
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 467 LQHFCLSFCVLXVWHVSCGHKPTQVYFLLPILCFQ 363
L +C+S C+ H C PT ++ +LCFQ
Sbjct: 913 LSVYCVSNCLPHHRHCQCTVFPTVFIVIVSVLCFQ 947
>SB_33858| Best HMM Match : RVT_1 (HMM E-Value=3.7e-21)
Length = 692
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 590 ISCPRTMIHGYGLRPSSSSXCPLIG 516
I P HGYGLR S++S P+ G
Sbjct: 651 IPIPVATHHGYGLRSSTASVVPICG 675
>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1718
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 88 SSTCTPLTPKSSNSKVKRPGSLSNSSQ 8
SS +P+ PKS N++V + +LSN Q
Sbjct: 827 SSEPSPIIPKSINNRVIKSSALSNGEQ 853
>SB_34607| Best HMM Match : zf-CXXC (HMM E-Value=7)
Length = 182
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 428 WHVSCGHKPTQVYFLLPILCFQDSXPLYDVLTYLMFPL 315
W + CG +P + F+L ++ DS LY+ ++ ++ PL
Sbjct: 49 WFIRCG-EPAKRRFILGLIRRFDSIDLYEYISSILQPL 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,456,407
Number of Sequences: 59808
Number of extensions: 399360
Number of successful extensions: 924
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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