Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0563
(591 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical pr... 65 3e-11
Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical pr... 31 0.46
AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-li... 31 0.46
Z74030-3|CAA98437.2| 395|Caenorhabditis elegans Hypothetical pr... 30 1.4
U12965-5|AAA20612.2| 346|Caenorhabditis elegans Serpentine rece... 29 1.9
AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin c-t... 29 2.5
AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin c-t... 29 3.3
U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine rece... 28 4.3
U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine rece... 28 4.3
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 28 4.3
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 28 4.3
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 27 7.5
U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical pr... 27 10.0
>Z46676-9|CAA86665.2| 321|Caenorhabditis elegans Hypothetical
protein C08B11.7 protein.
Length = 321
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/51 (56%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Frame = +3
Query: 6 SWLELESDPGLFTLLLEDFGVKGVQVEEIYDL--HKPLESPVYGFIFLFRW 152
SW +ESDPG+FT +L FGV G+QVEE+Y L K + P YG IFLF+W
Sbjct: 6 SWCLIESDPGVFTEMLRGFGVDGLQVEELYSLDDDKAMTRPTYGLIFLFKW 56
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +2
Query: 218 DHQ*YFCCTANGTNSCATHALLSILLNC--PNLHLGETLSRLKHHTVGMNPENKGWAIGN 391
D Q F N+CAT AL+++L+N ++ LG L++ K + ++P +G + N
Sbjct: 68 DKQNIFFAHQTIQNACATQALINLLMNVEDTDVKLGNILNQYKEFAIDLDPNTRGHCLSN 127
Query: 392 TPELACAHNS 421
+ E+ HNS
Sbjct: 128 SEEIRTVHNS 137
>Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical
protein C30G7.1 protein.
Length = 232
Score = 31.5 bits (68), Expect = 0.46
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -3
Query: 238 TKILLMVSSSRXKL-SICSTNFRLDLRSSIHLNKKINPYTGLSKGLCRS*ISSTCTPLTP 62
TK +LM+ R KL +I SS+ NKK P + + K S S+ + P
Sbjct: 126 TKPMLMLKEVRQKLENISKAEKTKPSTSSMSTNKKGKPISTMKKRGVMSKKRSSKNKMAP 185
Query: 61 KSSNSKVKRPGSLSNSSQL 5
K+ + +K+ G + SS L
Sbjct: 186 KAKSHGLKKKGPATKSSGL 204
>AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-like
protein protein.
Length = 232
Score = 31.5 bits (68), Expect = 0.46
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -3
Query: 238 TKILLMVSSSRXKL-SICSTNFRLDLRSSIHLNKKINPYTGLSKGLCRS*ISSTCTPLTP 62
TK +LM+ R KL +I SS+ NKK P + + K S S+ + P
Sbjct: 126 TKPMLMLKEVRQKLENISKAEKTKPSTSSMSTNKKGKPISTMKKRGVMSKKRSSKNKMAP 185
Query: 61 KSSNSKVKRPGSLSNSSQL 5
K+ + +K+ G + SS L
Sbjct: 186 KAKSHGLKKKGPATKSSGL 204
>Z74030-3|CAA98437.2| 395|Caenorhabditis elegans Hypothetical
protein D1054.5 protein.
Length = 395
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +3
Query: 42 TLLLEDFGVKGVQVEEIYDLHKPLESPVYGFIFLFRWIEERRSRRKFVEQIESFXRDEET 221
T+ +ED +K + +EE+ + +ES + + +W +++ K++EQI ET
Sbjct: 265 TVSVEDPDLKDMSLEEMRRHAEDIESYIQDQVKQ-QWSQQKNETEKWIEQIAGKVAKTET 323
Query: 222 INNI 233
+N I
Sbjct: 324 MNTI 327
>U12965-5|AAA20612.2| 346|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 11 protein.
Length = 346
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 244 SKWYQQLRHSCFTF---HFT--KLSKSSFRGNIK*VKTSY 348
S +YQ + C F +F KLSKSSF GN+K + SY
Sbjct: 23 SNYYQMIISFCSVFPLIYFLLFKLSKSSFHGNLKTIFISY 62
>AC024774-1|AAM43789.1| 227|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 3 protein.
Length = 227
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 9 WLELESDPGLFTLLLEDFGVKGVQVEEIY----DLHKPLESPVYGFIFLFRWIEERRSRR 176
W LES+P L+ G+ G++ ++Y ++ + + +P I F E R
Sbjct: 9 WQALESNPETINPFLKKIGITGLECVDVYSFDDEMLQFVPTPQLALILCFPSAEAREFLS 68
Query: 177 KFVEQIE 197
K E++E
Sbjct: 69 KQYEEVE 75
>AC024774-2|AAM43790.1| 249|Caenorhabditis elegans Ubiquitin
c-terminal hydrolase(family 1) protein 2 protein.
Length = 249
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 9 WLELESDPGLFTLLLEDFGVKGVQVEEIY----DLHKPLESPVYGFIFLFRWIEERRSRR 176
W LES+P L GV GV+ +++ ++ + + +P I F R R
Sbjct: 8 WQALESNPETINPFLSKIGVSGVECVDVFSFDDEMLQFIPTPQLALILCFPSSGVREFRA 67
Query: 177 KFVEQIE 197
K E++E
Sbjct: 68 KQYEEVE 74
>U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 277 FTFHFTKLSKSSFRGNIK*VKTSY 348
F F F KL KSSF GN+K V Y
Sbjct: 50 FYFIFFKLIKSSFHGNLKCVLIGY 73
>U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 8 protein.
Length = 351
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 277 FTFHFTKLSKSSFRGNIK*VKTSY 348
F F F KL KSSF GN+K V Y
Sbjct: 50 FYFIFFKLIKSSFHGNLKCVLIGY 73
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 356 MNPENKGWAIGNTPELACAHNSHAIP-XARKKTDKNAGVSTGSFTGXAYH 502
++PE+ G +IGNT + A+ ++P + + TD G + G+ +H
Sbjct: 19 VDPEDDGVSIGNTQDSQFAYEQFSVPTQSSQATDLLPGGTDGTTNDLPFH 68
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 356 MNPENKGWAIGNTPELACAHNSHAIP-XARKKTDKNAGVSTGSFTGXAYH 502
++PE+ G +IGNT + A+ ++P + + TD G + G+ +H
Sbjct: 19 VDPEDDGVSIGNTQDSQFAYEQFSVPTQSSQATDLLPGGTDGTTNDLPFH 68
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 133 LSFYLDG*KSADQGENSLNKLKALXGMRRPSIIFLL 240
L+FY + GEN L KLK GM + + + L
Sbjct: 227 LTFYTINLSKMENGENFLTKLKKRSGMEKEEVRYCL 262
>U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical
protein C06E7.2 protein.
Length = 501
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 425 HVSCGHKPTQVYFLLPILCFQDSXPLYDVLTYLMFPLNEDLDSLVKWKV 279
+ SC H Q++ L P L F D P+Y+ + Y + + L + +WK+
Sbjct: 126 YASCSHSKDQLFQLEPDLSFMD--PVYNDVIYFI----DALSTGKQWKI 168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,096
Number of Sequences: 27780
Number of extensions: 312313
Number of successful extensions: 806
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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