Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0563
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.0  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 317 GETLSRLKHHTVGMNP 364
           GET  R+K H V  NP
Sbjct: 170 GETYLRIKKHAVKFNP 185


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 436 STQKDRQKCWSFYWQFYR 489
           S++KDRQ+ W F   F +
Sbjct: 366 SSKKDRQELWIFTISFQK 383


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 199 LSICSTNFRLDLRSSIHL 146
           L+ C TN    +R+S+H+
Sbjct: 267 LTFCPTNLGTTVRASVHI 284


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 284 SILLNCPNLHLGETLSRLKHH 346
           S LLNC N     TL +LK +
Sbjct: 30  SYLLNCKNYDHPTTLLKLKRY 50


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 253 TICCATKILLMVSSSRXKLSICSTN 179
           TICC T+I+   S    +  IC+ +
Sbjct: 342 TICCKTRIIGRRSWVTRESQICNNS 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,238
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)