Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0563
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase f...    69   2e-12
At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase f...    69   3e-12
At2g37710.1 68415.m04624 lectin protein kinase, putative similar...    31   0.57 
At5g20760.1 68418.m02467 hypothetical protein                          31   0.76 
At1g69450.1 68414.m07980 early-responsive to dehydration protein...    30   1.3  
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,...    29   2.3  
At4g36970.1 68417.m05239 remorin family protein contains Pfam do...    28   4.1  
At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase fami...    28   5.4  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   5.4  
At3g48770.1 68416.m05326 hypothetical protein                          27   9.4  
At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein...    27   9.4  

>At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 330

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
 Frame = +3

Query: 6   SWLELESDPGLFTLLLEDFGVKGVQVEEIYDLHKPLES---PVYGFIFLFRW-IEERRSR 173
           SW  +ESDPG+FT L++   VKGVQVEE+Y L     +   PVYG IFLF+W   E+  R
Sbjct: 2   SWCTIESDPGVFTELIQQMQVKGVQVEELYSLDSDSLNNLRPVYGLIFLFKWQAGEKDER 61

Query: 174 RKFVEQIESFXRDEETINNIFVAQQMV 254
               +Q+ +     + INN    Q ++
Sbjct: 62  PTIQDQVSNLFFANQVINNACATQAIL 88



 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = +2

Query: 257 NSCATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGWAIGNTPELACAHNSHAIP 433
           N+CAT A+L+ILLN P + +G  LS LK  T     + KG AI N+  +  AHNS A P
Sbjct: 80  NACATQAILAILLNSPEVDIGPELSALKEFTKNFPSDLKGLAINNSDSIRAAHNSFARP 138


>At5g16310.1 68418.m01907 ubiquitin carboxyl-terminal hydrolase
           family 1 protein similar to 26S proteasome regulatory
           complex subunit p37A [Drosophila melanogaster]
           GI:6434962; contains Pfam profile PF01088: Ubiquitin
           carboxyl-terminal hydrolase, family 1
          Length = 334

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
 Frame = +3

Query: 6   SWLELESDPGLFTLLLEDFGVKGVQVEEIYDL-HKPLES--PVYGFIFLFRW-IEERRSR 173
           SWL +ESDPG+FT +++   VKGVQVEE+Y L    L+   PVYG I L++W  EE+ +R
Sbjct: 2   SWLPVESDPGIFTEIIQQMQVKGVQVEELYSLDFNSLDEIRPVYGLILLYKWRPEEKENR 61

Query: 174 RKFVEQIESFXRDEETINNIFVAQQMV 254
               E   +F    + INN    Q ++
Sbjct: 62  VVITEPNPNFFFASQIINNACATQAIL 88



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = +2

Query: 257 NSCATHALLSILLNCPNLHLGETLSRLKHHTVGMNPENKGWAIGNTPELACAHNSHAIP 433
           N+CAT A+LS+L+N  ++ +G  LS LK       PE KG AI N   +  AHN+ A P
Sbjct: 80  NACATQAILSVLMNSSSIDIGSELSELKQFAKEFPPELKGLAINNNEAIRAAHNTFARP 138


>At2g37710.1 68415.m04624 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 675

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 78  QVEEIYDLHKPLESP--VYGFIFLFRWIEERRSRRKFVEQIESFXRD 212
           ++ E Y +  PL S   ++ FIFL  +I  RR  RKF E++E + ++
Sbjct: 285 RISEFYKIGMPLISLFLIFSFIFLVCYIVRRR--RKFAEELEEWEKE 329


>At5g20760.1 68418.m02467 hypothetical protein
          Length = 220

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 99  LHKPLESPVYGFI-FLFRWIEERRSRRKFVEQIESFXRDEETINNIFVAQQMVPTVAPLM 275
           LH P   P   F  F  R +E   +   + E I    R+E  + ++F+  Q+VPT     
Sbjct: 56  LHPPNIFPGQLFRNFFVRCLEFENATAMYYEAIRLIVREENVMGSLFLLNQLVPTYDYAT 115

Query: 276 LYFPFY 293
           + + F+
Sbjct: 116 IAYAFF 121


>At1g69450.1 68414.m07980 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 646

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 395 VYFLLPILCFQDSXPLYDVLTYLMFPLNEDLDSLVKWKVKHEWRNCWYH 249
           V+ LLP+ CF D   + D   +    L  DL S+   KV+ +W   W H
Sbjct: 30  VFVLLPVNCFGDQLTVIDYADWSANSL--DLFSVANLKVRSQW--LWVH 74


>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 504

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = -3

Query: 271 SGATVGTICC-----ATKILLMVSSSRXKLSICSTNFRLDLRSSIHLNKKINPYT 122
           SG + GTICC      + + +M    R   +  S      L++   + KKI PYT
Sbjct: 88  SGTSNGTICCDRTGSRSDVCIMKGDVRTHSASSSVFLFTSLKNKTKITKKIKPYT 142


>At4g36970.1 68417.m05239 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 427

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 365 ENKGWAIGNTPELACAHNSHAIPXARKKTDKNAGVSTGSFTGXA 496
           +NKGW+    P  +   +S AI   R+    ++ ++T  ++G A
Sbjct: 24  DNKGWSSERVPHPSSTTSSSAINGGRRHIGSSSALTTPFYSGRA 67


>At1g73980.1 68414.m08568 phosphoribulokinase/uridine kinase family
           protein weak similarity to SP|Q59190 Uridine kinase (EC
           2.7.1.48) (Uridine monophosphokinase) (Cytidine
           monophosphokinase) {Borrelia burgdorferi}; contains Pfam
           profile PF00485: Phosphoribulokinase / Uridine kinase
           family
          Length = 643

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 480 LPVETPAFLSVFLRAXGMACELWAQANSGVFPIAHPLFSGFXPTV*CFNLLNVSP 316
           +P+E P        A   AC+L AQ N G+  +     SG   T+    +LN  P
Sbjct: 36  VPIEDPLSFEKGFYAVIRACQLLAQKNDGLILVGLAGPSGAGKTIFTEKILNFMP 90


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 115  RARCTDLSFYLDG*KSADQGENSLNKLKALXGMRRPSIIFLLHSKWYQQLRHSCFTF 285
            R  C  LS  L    + +  E++L+KLK      +  +IF    K YQ LR +   F
Sbjct: 3216 RGECGYLSGLLYSGNNDESSEHTLSKLKTEHKRLQRKVIFRSDPKKYQDLRRALDEF 3272


>At3g48770.1 68416.m05326 hypothetical protein
          Length = 1899

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 299 CPNLHLGETLSRLKHHTVGMN 361
           C   ++G  ++R+KHH  G+N
Sbjct: 50  CGKQYVGSEINRMKHHLAGLN 70


>At2g10050.1 68415.m01043 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 120

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 431 PXARKKTDKNAGVSTGSFTGXAYHFG 508
           P   +K  K +G +T  FTG  Y FG
Sbjct: 34  PQNTQKLKKKSGENTSKFTGTCYKFG 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,845
Number of Sequences: 28952
Number of extensions: 289354
Number of successful extensions: 786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)