Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0562
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   114   1e-26
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.33 
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    27   1.8  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    26   4.0  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   5.3  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   9.3  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   9.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.3  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  114 bits (274), Expect = 1e-26
 Identities = 60/128 (46%), Positives = 77/128 (60%), Gaps = 5/128 (3%)
 Frame = +1

Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
           M LHH KHH TY+NNLN A+EKLA      D++  + L  A+KFNGGGHINHS+FW  L+
Sbjct: 47  MKLHHDKHHQTYVNNLNAAQEKLADPNL--DLEGEVALQAAIKFNGGGHINHSLFWKILA 104

Query: 436 P---NGGKP--SDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIA 600
           P    GGKP  S  L KA+   +GS ++ +      L   +GSGW WL  +K    L+I 
Sbjct: 105 PQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIVDKD-GSLRIT 163

Query: 601 TCQNQDPL 624
           T  NQD +
Sbjct: 164 TTANQDTI 171



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 164 IRVAGASRQKHTLPELPYEYNALEPVIS 247
           + +A     K TLP LPY YNALEP +S
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALS 43


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 274 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 447
           K+HA           K+ QA  K   D  +N+A  + ++N     N+ +FW  +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 463 LTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWL 564
           + KAV ++FGS +NL     +L     G+ W W+
Sbjct: 140 INKAVNENFGSKENLLSKIHELASNSFGACWLWI 173


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
 Frame = +1

Query: 403 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWL 564
           +NH  F+  L SP      +D+    L   ++  FGS+  L+     +     G GW WL
Sbjct: 76  VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135

Query: 565 GYNKQMKKLQIATCQN 612
            Y+ +     +    N
Sbjct: 136 VYSPEKSLFSLLCTYN 151


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 372 CKVDNGVDITFSLCLCEFLFSNV 304
           C VD+  +I+ SLC  EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 409 HSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLRI 513
           H +  H LS N      +L  +V +DF + DN R+
Sbjct: 54  HELRRHRLSKNTRLLLGLLRNSVARDFANMDNSRL 88


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 432 QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFSLCL 328
           QV+ K  ++D T      G  K DN + +TF L +
Sbjct: 91  QVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIM 125


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 250  TANDRLQCIVLVRK 209
            TANDRLQCI+  ++
Sbjct: 3149 TANDRLQCIIQTKQ 3162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,946
Number of Sequences: 5004
Number of extensions: 51810
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)