Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0562
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161...    85   6e-17
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225...    66   3e-11
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86...    51   9e-07
04_03_0918 - 20806627-20806724,20807674-20807962                       29   2.4  
01_01_0257 + 2097785-2097797,2098080-2098189,2098299-2098392,209...    28   5.5  
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895...    27   9.7  

>05_03_0512 +
           14913356-14913769,14915907-14916032,14916129-14916185,
           14916950-14917027,14917681-14917773
          Length = 255

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 58/151 (38%), Positives = 73/151 (48%), Gaps = 28/151 (18%)
 Frame = +1

Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINH-------- 411
           M LHH KHHATY+ N N A E+L  A AKGD   I++L  A+KFNGGG            
Sbjct: 52  MRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLA 111

Query: 412 ----SIFW--------------HNLSPNGG--KPSDVLTKAVEKDFGSWDNLRINCRQLL 531
               S F+                L   GG   P   L  A+++DFGS++ L        
Sbjct: 112 YGFLSFFFFVLFIAGDAGGGGSEELGGEGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEG 171

Query: 532 WQYRGSGWGWLGYNKQMKKLQIATCQNQDPL 624
              +GSGW WL  +K+ KKL + T  NQDPL
Sbjct: 172 AALQGSGWVWLALDKEAKKLSVETTANQDPL 202



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 164 IRVAGASRQKHT--LPELPYEYNALEPVISRE 253
           +  A A+R   T  LP+LPY+Y ALEP IS E
Sbjct: 19  LAAAAAARGVTTVALPDLPYDYGALEPAISGE 50


>06_01_0314 +
           2255908-2255979,2256354-2256512,2257021-2257209,
           2257390-2257561,2257711-2257784,2257818-2257904,
           2257975-2257998,2258100-2258225
          Length = 300

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
 Frame = +1

Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA-----PALKFNGGGHI-NHS 414
           + LH  KH   Y+++LN   ++LA +   G  ++ +I  A     P  ++N    + NH 
Sbjct: 89  VELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNGNPLPEYNNAAQVWNHH 145

Query: 415 IFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKL 591
            FW ++ P GG  P   + + +EKDFGS+ N R    +      GSGW WL   ++ +K 
Sbjct: 146 FFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLLGSGWVWLVLKRKERKF 205

Query: 592 QIATCQN 612
            +   QN
Sbjct: 206 SVVHTQN 212


>06_01_0109 -
           863806-864045,864448-864566,864680-864851,864914-865108,
           865179-865388,865738-865926
          Length = 374

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 406 NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGY 570
           NH  +W ++ P GG KP + L K + +DFGS+D +            GSGW WL Y
Sbjct: 201 NHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFGSGWVWLCY 256


>04_03_0918 - 20806627-20806724,20807674-20807962
          Length = 128

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 532 WQYRGSGWGW 561
           W++RGSGWGW
Sbjct: 78  WRHRGSGWGW 87


>01_01_0257 +
           2097785-2097797,2098080-2098189,2098299-2098392,
           2098786-2098974,2099061-2099120,2099231-2099391
          Length = 208

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 538 YRGSGWGWLGYNKQMKKLQIATCQNQDPLQATTG 639
           Y   GWG   Y   +++LQ+A   N +  Q+  G
Sbjct: 152 YHHQGWGPYAYFHMLEELQVANSHNAESQQSVCG 185


>06_03_0152 +
           17287133-17287490,17288541-17288734,17289349-17289557,
           17289640-17289742,17290128-17290291,17290554-17290692,
           17290908-17291078,17291162-17291298,17291445-17291759,
           17291906-17291965,17292372-17292511,17292691-17292788,
           17292875-17293387
          Length = 866

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 262 DSCFTANDRLQCIVLVRKLWQSMLLA 185
           D+  + ++RLQC ++  K+W+S L A
Sbjct: 549 DNTLSVSERLQCCIVAFKVWRSNLEA 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,354
Number of Sequences: 37544
Number of extensions: 372535
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)