Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0562
(646 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10) 56 2e-08
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_14229| Best HMM Match : VAR1 (HMM E-Value=5) 29 3.2
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_55823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26) 27 9.9
SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26) 27 9.9
SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26) 27 9.9
SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_4788| Best HMM Match : rve (HMM E-Value=0) 27 9.9
SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26) 27 9.9
SB_46104| Best HMM Match : rve (HMM E-Value=1.4e-10) 27 9.9
SB_39172| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26) 27 9.9
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 27 9.9
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 27 9.9
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10)
Length = 75
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAK 342
M LHHSKHHATY+NNLN+AEEK +AQAK
Sbjct: 46 MRLHHSKHHATYVNNLNIAEEKCLEAQAK 74
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 185 RQKHTLPELPYEYNALEPVISRE 253
R KHTLP+LPY+Y+ALEP I+ E
Sbjct: 22 RAKHTLPDLPYDYDALEPTINTE 44
>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDI--DTIINLA-----------PALKFNGG 396
+ +HH HHA Y LN A ++ ++ + D+ +I+ + + NGG
Sbjct: 268 LRVHHLGHHAAYTKKLNAALKEWRESGKEKDLASKSIVEILRNNEQIPDKWRTDVINNGG 327
Query: 397 GHINHSIFWHNLSPNGGK----PSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWL 564
G +NH+++W +SPN P+ + ++K G++ + + + GSG+ WL
Sbjct: 328 GFVNHALYWATMSPNPKSEPRTPTGKIGDLIDKSHGNFSMFKQWFDEQVNSMFGSGYTWL 387
Query: 565 GYNKQMKKLQIATCQNQD 618
+ L I NQ+
Sbjct: 388 CQDVTSGFLTILNMGNQE 405
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 188 QKHTLPELPYEYNALEPVISRET 256
+K+TLPELPY+YN LEP I T
Sbjct: 245 EKYTLPELPYDYNELEPHIDEAT 267
>SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)
Length = 356
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 357 HYQPCTSLEIQWWWSHQPLDLLAQPVT 437
HY ++ WW SH PLD A+ T
Sbjct: 18 HYSNHREAQVGWWLSHWPLDTAARART 44
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -1
Query: 265 EDSCFTANDRLQCIVLVRKLWQSMLLARSTG---NSNQ 161
+D+ F ND LQ + RK WQ ARS+G NSNQ
Sbjct: 52 QDTAFLQND-LQKLEAWRKTWQMDFNARSSGEINNSNQ 88
>SB_55823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +1
Query: 286 TYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVL 465
T NLN+A + Q I T++ + P L +GGG N I + GK DVL
Sbjct: 24 TMHENLNIAFQTQETHQL---IYTVLEVQPRLASSGGGKTNDEIVYELADSILGKLMDVL 80
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 216 TSTMHWSRSLAVKHESSSQQTSRDLYQQSKR 308
TST+ SRSL K S +++ + DL +Q+K+
Sbjct: 552 TSTVPSSRSLPRKFSSETEKNAEDLAKQAKK 582
>SB_43653| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 342
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 159 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 216
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 217 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 268
>SB_28715| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 359
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 210 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 267
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 268 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 319
>SB_26190| Best HMM Match : rve (HMM E-Value=3.1e-26)
Length = 316
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 57 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 114
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNG 444
+ + AQA K + + T+ L K +GG + W N G
Sbjct: 115 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRNTPTTG 166
>SB_20817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 445 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 502
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 503 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 554
>SB_4788| Best HMM Match : rve (HMM E-Value=0)
Length = 1125
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 303 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 360
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 361 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 412
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 853 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 910
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 911 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 962
>SB_952| Best HMM Match : rve (HMM E-Value=9.4e-26)
Length = 455
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 183 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 240
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 241 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKASGGSEFQALLDWRN-TPTAG 292
>SB_46104| Best HMM Match : rve (HMM E-Value=1.4e-10)
Length = 263
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 4 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 61
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 62 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 113
>SB_39172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 2 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 59
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 60 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 111
>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 383
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 210 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 267
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 268 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 319
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 386 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 443
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 444 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 495
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 27.5 bits (58), Expect = 9.9
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 57 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 114
Query: 295 NNLNVAEEKLAQAQAK--GDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA AK + T+ L K +GG + W N +P G
Sbjct: 115 FEHKTSSPRYAQANAKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 166
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 407 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 464
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 465 FEHKTSSPRYAQANGKAENAVQTVKRLFKKCKTSGGSEFQALLDWRN-TPTAG 516
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +1
Query: 118 NFFSHHVNVTKDWIIDSSCRCFSPEAYFARASVR-VQCTGAGH*P*NMSLHHSKHHATYI 294
++FS+++ V + + S +A FAR + T G P S S T++
Sbjct: 497 DYFSNYIEVARLNTVTSRAIIKELKAIFARFGIPDTLITDNG--PQFASAEFSVFAKTWM 554
Query: 295 NNLNVAEEKLAQAQAKGD--IDTIINLAPALKFNGGGHINHSIFWHNLSPNGG 447
+ + AQA K + + T+ L K +GG + W N +P G
Sbjct: 555 FEHKTSSPRYAQANGKAENAVQTVKRLFEKCKTSGGSEFQALLDWRN-TPTAG 606
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,112,039
Number of Sequences: 59808
Number of extensions: 412539
Number of successful extensions: 990
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -