Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0562
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical pr... 175 2e-44
D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese super... 175 2e-44
D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese super... 175 2e-44
X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese super... 169 2e-42
X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese super... 169 2e-42
U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide... 169 2e-42
AC006603-7|ABB51201.1| 576|Caenorhabditis elegans Hypothetical ... 31 0.92
>Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical
protein F10D11.1 protein.
Length = 221
Score = 175 bits (427), Expect = 2e-44
Identities = 80/130 (61%), Positives = 96/130 (73%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M LHH KHHATY+NNLN EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+
Sbjct: 47 MQLHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLA 106
Query: 436 PNGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIATCQNQ 615
+GG+PS L A++ DFGS DNL+ +GSGWGWLGY + K L++ATC NQ
Sbjct: 107 KDGGEPSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQ 166
Query: 616 DPLQATTGLV 645
DPL+ATTGLV
Sbjct: 167 DPLEATTGLV 176
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 131 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISRE 253
+ +S+ + + VA A R KH+LP+LPY+Y LEPVIS E
Sbjct: 6 VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHE 45
>D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 221
Score = 175 bits (427), Expect = 2e-44
Identities = 80/130 (61%), Positives = 96/130 (73%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M LHH KHHATY+NNLN EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+
Sbjct: 47 MQLHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLA 106
Query: 436 PNGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIATCQNQ 615
+GG+PS L A++ DFGS DNL+ +GSGWGWLGY + K L++ATC NQ
Sbjct: 107 KDGGEPSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQ 166
Query: 616 DPLQATTGLV 645
DPL+ATTGLV
Sbjct: 167 DPLEATTGLV 176
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 131 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISRE 253
+ +S+ + + VA A R KH+LP+LPY+Y LEPVIS E
Sbjct: 6 VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHE 45
>D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese
superoxide dismutaseprecursor protein.
Length = 221
Score = 175 bits (427), Expect = 2e-44
Identities = 80/130 (61%), Positives = 96/130 (73%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M LHH KHHATY+NNLN EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+
Sbjct: 47 MQLHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLA 106
Query: 436 PNGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIATCQNQ 615
+GG+PS L A++ DFGS DNL+ +GSGWGWLGY + K L++ATC NQ
Sbjct: 107 KDGGEPSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQ 166
Query: 616 DPLQATTGLV 645
DPL+ATTGLV
Sbjct: 167 DPLEATTGLV 176
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 131 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISRE 253
+ +S+ + + VA A R KH+LP+LPY+Y LEPVIS E
Sbjct: 6 VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHE 45
>X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese
superoxide dismutase protein.
Length = 218
Score = 169 bits (410), Expect = 2e-42
Identities = 76/129 (58%), Positives = 93/129 (72%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M LHH KHHATY+NNLN EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+
Sbjct: 47 MQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLA 106
Query: 436 PNGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIATCQNQ 615
+GG+PS L +++DFGS DNL+ + +GSGWGWLGY K+ K L+IATC NQ
Sbjct: 107 KDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQ 166
Query: 616 DPLQATTGL 642
DPL+ L
Sbjct: 167 DPLEGMVPL 175
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Frame = +2
Query: 170 VAG--ASRQKHTLPELPYEYNALEPVISRE 253
VAG A R KHTLP+LP++Y LEPVIS E
Sbjct: 16 VAGVLAVRSKHTLPDLPFDYADLEPVISHE 45
>X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 218
Score = 169 bits (410), Expect = 2e-42
Identities = 76/129 (58%), Positives = 93/129 (72%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M LHH KHHATY+NNLN EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+
Sbjct: 47 MQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLA 106
Query: 436 PNGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIATCQNQ 615
+GG+PS L +++DFGS DNL+ + +GSGWGWLGY K+ K L+IATC NQ
Sbjct: 107 KDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQ 166
Query: 616 DPLQATTGL 642
DPL+ L
Sbjct: 167 DPLEGMVPL 175
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Frame = +2
Query: 170 VAG--ASRQKHTLPELPYEYNALEPVISRE 253
VAG A R KHTLP+LP++Y LEPVIS E
Sbjct: 16 VAGVLAVRSKHTLPDLPFDYADLEPVISHE 45
>U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide
dismutase) protein3 protein.
Length = 218
Score = 169 bits (410), Expect = 2e-42
Identities = 76/129 (58%), Positives = 93/129 (72%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M LHH KHHATY+NNLN EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+
Sbjct: 47 MQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTNLA 106
Query: 436 PNGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIATCQNQ 615
+GG+PS L +++DFGS DNL+ + +GSGWGWLGY K+ K L+IATC NQ
Sbjct: 107 KDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQ 166
Query: 616 DPLQATTGL 642
DPL+ L
Sbjct: 167 DPLEGMVPL 175
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Frame = +2
Query: 170 VAG--ASRQKHTLPELPYEYNALEPVISRE 253
VAG A R KHTLP+LP++Y LEPVIS E
Sbjct: 16 VAGVLAVRSKHTLPDLPFDYADLEPVISHE 45
>AC006603-7|ABB51201.1| 576|Caenorhabditis elegans Hypothetical
protein B0524.7 protein.
Length = 576
Score = 30.7 bits (66), Expect = 0.92
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Frame = +1
Query: 292 INNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIF---WH---NLSPNGGKP 453
+ N K A+ K + N + LK NG INH + W + NG P
Sbjct: 358 LRNAKQKAAKRARKLVKNWKKSAQNKSGVLKINGNHVINHDVVVKKWKVELKIEGNGESP 417
Query: 454 SDVLTKAVEKDFGSWDNLRINCRQLLWQ 537
V+ KA E G WD R N + W+
Sbjct: 418 RKVVRKAKETS-GYWD-FRWNFTKFAWK 443
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,632
Number of Sequences: 27780
Number of extensions: 305977
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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