Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0562
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondria... 129 1e-30
At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative / m... 122 3e-28
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 69 3e-12
At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero... 69 4e-12
At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast ... 62 4e-10
At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast ... 62 4e-10
At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast ... 62 4e-10
At1g11170.2 68414.m01279 expressed protein contains Pfam profile... 30 1.5
At1g11170.1 68414.m01280 expressed protein contains Pfam profile... 30 1.5
At1g61240.2 68414.m06901 expressed protein contains Pfam profile... 29 2.0
At1g61240.1 68414.m06900 expressed protein contains Pfam profile... 29 2.0
At5g40470.1 68418.m04908 expressed protein 29 2.6
At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At1g08040.1 68414.m00878 expressed protein contains Pfam profile... 29 3.5
At2g37890.1 68415.m04651 mitochondrial substrate carrier family ... 28 4.6
At1g32950.1 68414.m04058 subtilase family protein contains simil... 28 4.6
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 28 4.6
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ... 27 8.1
>At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondrial
(SODA) / manganese superoxide dismutase (MSD1) identical
to manganese superoxide dismutase [Arabidopsis thaliana]
gi|3273751|gb|AAC24832
Length = 231
Score = 129 bits (312), Expect = 1e-30
Identities = 63/132 (47%), Positives = 81/132 (61%), Gaps = 4/132 (3%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M +HH KHH Y+ N N A E+L QA KGD T++ L A+KFNGGGH+NHSIFW NL+
Sbjct: 52 MQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNHSIFWKNLA 111
Query: 436 PN---GGK-PSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIAT 603
P+ GG+ P L A++ FGS + L +GSGW WLG +K++KKL + T
Sbjct: 112 PSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSAEGAAVQGSGWVWLGLDKELKKLVVDT 171
Query: 604 CQNQDPLQATTG 639
NQDPL G
Sbjct: 172 TANQDPLVTKGG 183
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +2
Query: 161 LIRVAGASRQKHTLPELPYEYNALEPVISRE 253
L+R+ G Q TLP+LPY+Y ALEP IS E
Sbjct: 22 LLRIRGI--QTFTLPDLPYDYGALEPAISGE 50
>At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative /
manganese superoxide dismutase, putative similar to
manganese superoxide dismutase (MSD1) [Arabidopsis
thaliana] gi|3273751|gb|AAC24832
Length = 241
Score = 122 bits (293), Expect = 3e-28
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLS 435
M LHH KHH TY+ N A L A A GD +++ L +KFNGGGH+NH+IFW NL+
Sbjct: 57 MRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSVVKLQSLIKFNGGGHVNHAIFWKNLA 116
Query: 436 P---NGGK-PSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIAT 603
P GGK P D L A++ FGS + L +GSGW W G ++++K+L + T
Sbjct: 117 PVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAEGAAVQGSGWVWFGLDRELKRLVVET 176
Query: 604 CQNQDPL 624
NQDPL
Sbjct: 177 TANQDPL 183
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 182 SRQKHTLPELPYEYNALEPVISRE 253
S + +LP+LPY Y+ALEP IS E
Sbjct: 32 SMKTASLPDLPYAYDALEPAISEE 55
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 68.9 bits (161), Expect = 3e-12
Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII-------NLAPALKFNGGGHINHS 414
+ H KHH TY+ NLN ++ L ++ ++ N+ PA N NH
Sbjct: 74 LDYHWGKHHKTYVENLN--KQILGTDLDALSLEEVVLLSYNKGNMLPAFN-NAAQAWNHE 130
Query: 415 IFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKL 591
FW ++ P GG KP+ L + +E+DFGS++ + GSGW WL Y + +L
Sbjct: 131 FFWESIQPGGGGKPTGELLRLIERDFGSFEEFLERFKSAAASNFGSGWTWLAY--KANRL 188
Query: 592 QIATCQNQDPLQATTGLV 645
+A N P + LV
Sbjct: 189 DVANAVNPLPKEEDKKLV 206
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 146 QRIGSLIRVAGASRQKHTLPELPYEYNALEPVISRET 256
+R+G+ + V+G L PY +ALEP +SRET
Sbjct: 37 RRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRET 73
>At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron
superoxide dismutase 3 (FSD3) identical to iron
superoxide dismutase 3 [Arabidopsis thaliana]
gi|3273757|gb|AAC24834
Length = 263
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLNVA---EEKLAQAQAKGDIDTIINLA-PALKFNGGGHI-NHSIF 420
+ +H KHH Y++NLN +++L + I N P +FN + NH F
Sbjct: 71 LEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELIKATYNNGNPLPEFNNAAQVYNHDFF 130
Query: 421 WHNLSPNGGK-PSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQI 597
W ++ P GG P + + ++KDFGS+ N R GSGW WL ++ ++L++
Sbjct: 131 WESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKFTNAALTQFGSGWVWLVLKREERRLEV 190
Query: 598 ATCQN 612
N
Sbjct: 191 VKTSN 195
>At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 61.7 bits (143), Expect = 4e-10
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIINLAPALK-FNGGGHI-NHSIFW 423
+ H KHH Y++NL V +L + I + N L FN NH FW
Sbjct: 32 LEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFW 91
Query: 424 HNLSP-NGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIA 600
++ P GGKPS L +E+DF S++ G+GW WL Y+ + K+ +
Sbjct: 92 ESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKV-VK 150
Query: 601 TCQNQDPL 624
T +PL
Sbjct: 151 TPNAVNPL 158
>At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 61.7 bits (143), Expect = 4e-10
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIINLAPALK-FNGGGHI-NHSIFW 423
+ H KHH Y++NL V +L + I + N L FN NH FW
Sbjct: 32 LEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFW 91
Query: 424 HNLSP-NGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIA 600
++ P GGKPS L +E+DF S++ G+GW WL Y+ + K+ +
Sbjct: 92 ESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKV-VK 150
Query: 601 TCQNQDPL 624
T +PL
Sbjct: 151 TPNAVNPL 158
>At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 61.7 bits (143), Expect = 4e-10
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Frame = +1
Query: 256 MSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIINLAPALK-FNGGGHI-NHSIFW 423
+ H KHH Y++NL V +L + I + N L FN NH FW
Sbjct: 32 LEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFW 91
Query: 424 HNLSP-NGGKPSDVLTKAVEKDFGSWDNLRINCRQLLWQYRGSGWGWLGYNKQMKKLQIA 600
++ P GGKPS L +E+DF S++ G+GW WL Y+ + K+ +
Sbjct: 92 ESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNEKLKV-VK 150
Query: 601 TCQNQDPL 624
T +PL
Sbjct: 151 TPNAVNPL 158
>At1g11170.2 68414.m01279 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 335
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 387 QWW---WSHQPLDLLAQPVTKWWQA 452
+WW WS + + ++AQ TKWW A
Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181
>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 438
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 387 QWW---WSHQPLDLLAQPVTKWWQA 452
+WW WS + + ++AQ TKWW A
Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181
>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +3
Query: 387 QWW---WSHQPLDLLAQPVTKWWQA 452
QWW WS + + ++A TKWW A
Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178
>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +3
Query: 387 QWW---WSHQPLDLLAQPVTKWWQA 452
QWW WS + + ++A TKWW A
Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178
>At5g40470.1 68418.m04908 expressed protein
Length = 496
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 529 LWQYRGSGWGWLGYNKQMKKLQIATCQNQDP 621
LW+ + SG+ W+ +K+L I C P
Sbjct: 155 LWKPQNSGFTWIALFSSLKELSIHVCSTSSP 185
>At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 529 LWQYRGSGWGWLGYNKQMKKLQI 597
L +Y G+GW WLG + + ++++
Sbjct: 232 LTRYEGAGWQWLGDSSHISRIEV 254
>At1g08040.1 68414.m00878 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 382
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 357 HYQPCTSLEIQWWWSHQPLDLLAQPVTKWWQA 452
HY T+ Q+ WS + + A+ TKWW A
Sbjct: 155 HYDGRTTEWDQFEWSKNAIHISAKKQTKWWYA 186
>At2g37890.1 68415.m04651 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 337
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 340 KGDIDTIINLAPALKFNGGGHINHSIFWHNLSPN 441
KG T++ + P+L N + + +FWH+ PN
Sbjct: 206 KGLGATLLGVGPSLAINFAAYESMKLFWHSHRPN 239
>At1g32950.1 68414.m04058 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 773
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 491 PKSFSTALVRTSEGLPPFGDRLCQKIEWLM*PPPLNFKAG 372
P +F +A+V T+ PFG+++ + L P P ++ G
Sbjct: 573 PAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDPFDYGGG 612
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 495 GSKVFLNGFGENIRRLATIW*QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFS 337
GS ++ GF R TI +V KD+VV + GW + D +++ S
Sbjct: 395 GSSIWCIGFQRMSHRRITILGDLVLKDKVVVYDLVRQRIGWAEYDCSLEVNVS 447
>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 623 RGSWFWHVAICNF 585
+G+WF+H ICNF
Sbjct: 241 QGNWFYHCPICNF 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,866
Number of Sequences: 28952
Number of extensions: 292058
Number of successful extensions: 754
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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