Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0561
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    47   3e-06
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.3  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   7.0  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   7.0  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    25   9.2  

>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 24/73 (32%), Positives = 42/73 (57%)
 Frame = +2

Query: 35  IVGRINPDTVWEYIGKMKKASNKDIIILRLQAANDEEKMPYIALFSYLSSRNRLGVVKVS 214
           I GRI+  +V +Y   ++K  +K+II + L    ++    +  L+ Y   RNR GV+  S
Sbjct: 522 IEGRISVSSVLQYFHALRKTPSKEIIAV-LFVPTEQNSQGFDILYDYFVKRNRYGVLH-S 579

Query: 215 NTTTVKDFYVVPL 253
            + +VKD Y++P+
Sbjct: 580 KSNSVKDAYIIPM 592


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 394  PAKVARESHKRSYTPPVQSKITHTP-PASPRRRNP 495
            P+ VA  +   S  PP QS   H P PA P  ++P
Sbjct: 1506 PSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHP 1540


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 214 KYDNSERFLRGSAAANTTLPPVLMPLDGPGIGEVKTHQLLTIVIRQRKKRLAS 372
           K  N  +F+  SA +   + P+ + +D P I E  +  +    +++R KRL++
Sbjct: 58  KSTNISKFI--SAPSTKKMSPMDISMDSPTILEPNSQGISRSAVQERSKRLSA 108


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 355 KKRLASHIPKEVI-PAKV-ARESHKRSYTPPVQSKITHTP 468
           ++ L S IP  V  P K    +SH+RS++ P  +K + TP
Sbjct: 392 RENLLSLIPSAVSSPTKANTNKSHQRSFSIPKATKDSQTP 431


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 56  DTVWEYIGKMKKASNKDIIILRLQAANDEEKMPYIALFSYLSSRNRLG 199
           ++++E I K+KK S    I + +  A   E+ PY  L   ++S +  G
Sbjct: 132 ESIFEEIDKLKKKSPNTTITVSISLAEIIEETPYDLLQPNVNSSHTPG 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,163
Number of Sequences: 5004
Number of extensions: 41933
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)