Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0561
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 32 0.44
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 31 0.58
08_02_0613 - 19330124-19331587 29 4.1
08_02_0575 - 18876988-18877029,18877072-18877102,18878290-188784... 29 4.1
05_04_0060 + 17576427-17578781 29 4.1
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 28 5.4
09_04_0217 + 15739279-15739365,15739460-15739621,15739726-157397... 28 7.2
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 7.2
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 28 7.2
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 27 9.5
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = +1
Query: 373 HIPKEVIPAKVARESHKRSYTPPVQSKITHTPPASPRRRNPLPLPYT 513
H PK P K +E +YTPP K T TPP P P PYT
Sbjct: 57 HEPK---PEKPPKEHKPPAYTPP---KPTPTPPTYTPTPKPTPPPYT 97
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 226 SERFLRGSAAANTTLPPVLMPLDGPGIG-EVKTHQLLTIVIRQRKKRLASHIPKEVI 393
S RFLR AAA + LP L P P G Q T +R ++ PKE I
Sbjct: 19 SSRFLRPLAAAGSLLPAALAPFAPPAAGARCFATQPATSSLRDSSPNWSNRPPKETI 75
>08_02_0613 - 19330124-19331587
Length = 487
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 331 LTIVIRQRKKRLASHIP---KEVIPAKVARESHKRSYTPPVQSKITHTPPASPRR 486
L++V LA H+P K P ++ ESH+RS+ P + P P R
Sbjct: 89 LSLVAVDPADELAVHVPIRNKYKRPTRLYHESHRRSFIPNASAADEPLPEQEPDR 143
>08_02_0575 -
18876988-18877029,18877072-18877102,18878290-18878418,
18878512-18879154,18882042-18883990,18884964-18885040
Length = 956
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +2
Query: 218 TTTVKDFYVVPLRRIPHFHQC*CLWTAPESARLKLISYSPSL*GKERNV*HLTFLK 385
T VK YV+ LRR+ +C E R K SY S G++ NV H+ LK
Sbjct: 796 TANVKG-YVMELRRVSACSRCCICMCGKEGYRNKFWSYRSSQEGQDINV-HMACLK 849
>05_04_0060 + 17576427-17578781
Length = 784
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 250 AAANTTLPPVLMPLDGPGIGEVKTHQLLTIVIRQRKKRLASHI 378
A A P +L+PL GPG+ EV ++ +T V + R A+H+
Sbjct: 659 AEAQLNYPAILVPLRGPGV-EVTVNRTVTNV-GPARARYAAHV 699
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 373 HIPKEVIPAKVARESHKRSYTPPVQSKITHTPPASPRRRNPLPLP 507
H+PK + A A + +S TP K P SP+ P P+P
Sbjct: 758 HVPKPTLQANRASANCSKS-TPVDMEKDVPLPSRSPQINKPAPVP 801
>09_04_0217 +
15739279-15739365,15739460-15739621,15739726-15739794,
15740143-15740275,15740873-15741105,15741462-15741526,
15743252-15743327,15744076-15744144,15744233-15744409,
15745349-15745633
Length = 451
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/71 (21%), Positives = 37/71 (52%)
Frame = +2
Query: 26 ELDIVGRINPDTVWEYIGKMKKASNKDIIILRLQAANDEEKMPYIALFSYLSSRNRLGVV 205
+LD+V R+N + +G + +++ ++ L ++AA + ++ ++LF Y ++
Sbjct: 188 DLDMVKRLNKRMWPDSVGSISRSAKEEADELLMEAALNNNQVHDVSLFDYKYILPIFHII 247
Query: 206 KVSNTTTVKDF 238
+TT +F
Sbjct: 248 IDGHTTNTANF 258
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 27.9 bits (59), Expect = 7.2
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Frame = +1
Query: 226 SERFLRGSAAANTTLPPVLMPLDGPGIGE--VKTHQLLTIVIRQRKKRLASHIPKEVIPA 399
SE RG+ + PP G + +T Q + +S IP I
Sbjct: 92 SEHLKRGTCPNFSAPPPGAAAASGSSGSQHQQQTPQAALQALPPPNSTASSPIPISSIAP 151
Query: 400 KVARESHKRSYTPPVQSKITHTPPASPRRRNPLPLPYTA 516
R H S QS H + R+R+ +P YTA
Sbjct: 152 SSPRHPHHHSQPQQPQSHHHHHHHSGSRKRHSMPPAYTA 190
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 379 PKEVIPAKVARESHKRSYTPPVQSKITH-TPPASPRRRNPLPLP 507
P P K H S PP++S TPP SP ++ PLP P
Sbjct: 568 PAPPSPPKPPSPRHPPS-PPPLRSPPRQPTPPPSPSQQPPLPTP 610
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 436 PPVQSKITH-TPPASPRRRNPLPLP 507
PP++S TPP SP ++ PLP+P
Sbjct: 499 PPLRSPPRQPTPPPSPSQQPPLPVP 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,091
Number of Sequences: 37544
Number of extensions: 296925
Number of successful extensions: 1148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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