Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0561
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_46558| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 3.2
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 27 9.7
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 27 9.7
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 27 9.7
SB_3134| Best HMM Match : DUF1104 (HMM E-Value=8.5) 27 9.7
>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/78 (38%), Positives = 51/78 (65%)
Frame = +2
Query: 20 PTELDIVGRINPDTVWEYIGKMKKASNKDIIILRLQAANDEEKMPYIALFSYLSSRNRLG 199
P L + GRI D VW+YI +++ ++++ + ++R + + D+EK Y++L+SY SR R G
Sbjct: 442 PDTLHLHGRIGFDQVWDYIYQLRSSTSRVVSVIRYEPSTDDEKTSYVSLYSYFYSRKRCG 501
Query: 200 VVKVSNTTTVKDFYVVPL 253
VV + + VKD Y+ PL
Sbjct: 502 VVN-NCYSGVKDMYLYPL 518
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 256 ANTTLPPVLMPLDGPGIGEVKTHQLLTIVIRQ----RKKRLASHIPKEVIPAKVARESHK 423
++ +P L+P DGPG+ E + H LL I++R ++ R SH K P K R H+
Sbjct: 520 SHAEIPKELLPFDGPGLDEPRPHMLLGIIVRTKPSFKRPRAVSH-HKSTSP-KAKRRHHR 577
Query: 424 RS 429
S
Sbjct: 578 HS 579
>SB_46558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 41 GRINPDTVWEYIGKMKKASNK 103
GR+ PDT+W Y+GKM + +
Sbjct: 44 GRLWPDTIWHYMGKMSLSDGR 64
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 352 RKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKITHTPPASPRRRNPLP 501
RK R S + P K+ R KRS TP +S+ SPR+ + P
Sbjct: 190 RKSRSRSPRKRSRSPRKMLRSPRKRSRTPRKRSRSPRKRSRSPRKGSHTP 239
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 346 RQRKKRLASHIPKEVI--PAKVARESHKRSYTPPVQSKITHTPPASPRRRNPLP 501
R R R S P++++ P K +R KRS +P +S+ +P++R+ P
Sbjct: 193 RSRSPRKRSRSPRKMLRSPRKRSRTPRKRSRSPRKRSRSPRKGSHTPKKRSRSP 246
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 427 SYTPPVQSKITHTPPASPRRRNPLPLPYT 513
+YTPP Q+ +TPPA N P+ T
Sbjct: 811 AYTPPAQTTEANTPPAQTTEANTPPVQTT 839
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 346 RQRKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKITHTPPASPRRRNPLPLP 507
R RK+ + + P+ R + SY+P + + + TP PRRR P P
Sbjct: 875 RDRKRYDSPPRRRRRSPSPPPRRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSP 928
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 316 KTHQLLTIVIRQRKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKITHTPPASPRRRNP 495
KT +++ + K + + +E V+ +S R TP V S+ + PP+ R++P
Sbjct: 495 KTEEIMQTHPQPDPKPVEPNQQQEEPEKPVSPKSQSRPSTPKVGSRPSSRPPSGSPRQSP 554
Query: 496 LP 501
P
Sbjct: 555 QP 556
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +1
Query: 343 IRQRKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKITHTP 468
+++ KK+LA+ + KE+ +E+ KR T P++++I P
Sbjct: 329 LKETKKKLATPLRKEIQSKPALKETKKRLAT-PIRAEIESKP 369
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 394 PAKVARESHKRSY-TPPVQSKITHTPPASPRRRNPLPLP 507
P + AR ++ SY PP+ K PP P+R +P P
Sbjct: 304 PQQAARIDYRASYGAPPLPPKRGGGPPLPPKRVANIPSP 342
>SB_3134| Best HMM Match : DUF1104 (HMM E-Value=8.5)
Length = 208
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 238 LRGSAAANTTLPPVLMPLDGPGIGEVKTHQLLTIVIRQRKKRLASHIPKEVIPAKVAR 411
+R S+ +NTT+P L P I + + LT I Q + ++ H P +P + R
Sbjct: 22 VRRSSQSNTTVPRSLNPALLAKIVQCTRERNLTNPIYQIRGKIHKHSPSVKLPHSIVR 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,645
Number of Sequences: 59808
Number of extensions: 324488
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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