Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0561
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    31   0.70 
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    31   0.70 
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    31   0.70 
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      31   0.92 
U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.        29   2.1  
U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.        29   2.1  
AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell...    29   2.1  
AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical ...    29   2.1  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC025716-14|AAK39603.1|  227|Caenorhabditis elegans Hypothetical...    28   6.5  
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 376 IPKEVIPAKVARESHKRSYTPPVQSKITHTPPASPRRRNPLPL 504
           +P+  +PAK +  S K + +PPV+ K+T  P   P+    +PL
Sbjct: 346 VPQVELPAKTSSVSQKTTVSPPVE-KVTPPPQHPPQLSLQVPL 387


>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 615 CFRYLTNLGCMLHHRRQLKMQQFY 544
           CFR L + GC+ HHRR + +++ +
Sbjct: 456 CFRDLLSFGCVQHHRRTMSVKKLH 479


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 615 CFRYLTNLGCMLHHRRQLKMQQFY 544
           CFR L + GC+ HHRR + +++ +
Sbjct: 563 CFRDLLSFGCVQHHRRTMSVKKLH 586


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 615 CFRYLTNLGCMLHHRRQLKMQQFY 544
           CFR L + GC+ HHRR + +++ +
Sbjct: 535 CFRDLLSFGCVQHHRRTMSVKKLH 558


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 439 PVQSKITHTPPASPRRRNPLPLP 507
           PVQS +TH PP +P  R P PLP
Sbjct: 248 PVQSPLTH-PPVAPMPRCPPPLP 269


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 346 RQRKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKI---THTPPASPRRRNP 495
           R+   +  S  PK  IP    R S   S +PP   +    + +PPA  RRR+P
Sbjct: 391 RRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSP 443


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 439 PVQSKITHTPPASPRRRNPLPLP 507
           PVQS +TH PP +P  R P PLP
Sbjct: 248 PVQSPLTH-PPVAPMPRCPPPLP 269


>U38937-1|AAA93079.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
 Frame = +1

Query: 280 LMPLDGPGIGEVKTHQLLTIVIRQRKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKIT 459
           L+  D P    V T      V        +S  P    P   +R+  KRS +P   S  T
Sbjct: 209 LLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTT 268

Query: 460 --HTPPASPRRR--NPLPLPYTA 516
               PP  P ++   P PL  TA
Sbjct: 269 APPPPPQPPTKKGMKPNPLNLTA 291


>U38935-1|AAB60254.1|  441|Caenorhabditis elegans LIN-1 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
 Frame = +1

Query: 280 LMPLDGPGIGEVKTHQLLTIVIRQRKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKIT 459
           L+  D P    V T      V        +S  P    P   +R+  KRS +P   S  T
Sbjct: 209 LLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTT 268

Query: 460 --HTPPASPRRR--NPLPLPYTA 516
               PP  P ++   P PL  TA
Sbjct: 269 APPPPPQPPTKKGMKPNPLNLTA 291


>AF067606-1|AAC17530.3|  441|Caenorhabditis elegans Abnormal cell
           lineage protein 1 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
 Frame = +1

Query: 280 LMPLDGPGIGEVKTHQLLTIVIRQRKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKIT 459
           L+  D P    V T      V        +S  P    P   +R+  KRS +P   S  T
Sbjct: 209 LLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTT 268

Query: 460 --HTPPASPRRR--NPLPLPYTA 516
               PP  P ++   P PL  TA
Sbjct: 269 APPPPPQPPTKKGMKPNPLNLTA 291


>AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical
           protein C52E2.7 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 73  IFPDCIWINSSYNIKFC 23
           +FP C W+N S+++K C
Sbjct: 80  VFPQCRWLNESFSVKKC 96


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 424 RSYTPPVQSKITHTPPASPRRRNPLPLPYTA 516
           R   P  Q ++T   PA P+ R P+P P  A
Sbjct: 332 RVVRPQPQQQLTRPAPARPQTRRPVPQPQQA 362


>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 MPYIALFSYLSSRNRLGVVKVSNTTTVKDFYVVPLRRIP 265
           +PYI L+S     ++ G+  V  TTT    YV+  R  P
Sbjct: 211 VPYITLYSVRVRESKFGMALVLETTTSSGEYVLGFRVDP 249


>U58742-5|AAB36859.3|  711|Caenorhabditis elegans Hypothetical
           protein F31A3.5 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 394 PAKVARESHKRSYTPPVQSKITHTPPASPRRRNP-LPLP-YTA 516
           PAK A E H +  T  +Q+ +T    ++P R  P LP   YTA
Sbjct: 84  PAKAAHERHSQPVTNMLQNMLTFNRQSAPGRALPKLPADLYTA 126


>AC025716-14|AAK39603.1|  227|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.16 protein.
          Length = 227

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 412 ESHKRSYTPPVQSKITHTPPASPRRRNPLPLPYTA 516
           E  K+   PPV+ +   TPP  P+   P P P  A
Sbjct: 138 EVEKKPEEPPVEDE-AKTPPEKPKVEEPAPAPAPA 171


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
           protein W03A3.2 protein.
          Length = 1540

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 211 YFYHA*PISTT*VTKQCDVWHFFLIISSLKS 119
           +F+H  PI+ + V ++CD  H F I S L S
Sbjct: 474 HFWHVTPINVS-VWQECDWHHLFSIFSKLPS 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,827
Number of Sequences: 27780
Number of extensions: 239460
Number of successful extensions: 770
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)