Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0561
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   2.0  
At1g54970.1 68414.m06278 proline-rich family protein similar to ...    29   2.6  
At5g22560.1 68418.m02635 hypothetical protein contains Pfam prof...    28   4.5  
At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-relate...    28   6.0  
At4g03640.1 68417.m00499 hypothetical protein includes At2g05890...    27   7.9  
At1g52580.1 68414.m05936 rhomboid family protein contains PFAM d...    27   7.9  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 352 RKKRLASHIPKEVIPAKVARESHKRSYTPPVQSKITHTPPASPRRRNPLP 501
           R+ R  +H  +   PA   R   +RS +PP + + + +PPA  RRR+P P
Sbjct: 290 RRHRRPTHEGRRQSPAPSRR---RRSPSPPARRRRSPSPPAR-RRRSPSP 335



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 421 KRSYTPPVQSKITHTPPASPRRRNPLPL 504
           +RS +PP + + + +PPA  RRR+P PL
Sbjct: 369 RRSPSPPARRRRSPSPPAR-RRRSPSPL 395


>At1g54970.1 68414.m06278 proline-rich family protein similar to
           proline-rich protein GI:170048 from [Glycine max]
          Length = 335

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 382 KEVIPAKVARESHKRSYTPPVQSKITHTPPASP 480
           K  +P  V ++S   S  PP   K T+TPP  P
Sbjct: 173 KPTLPPPVYKKSPSYSPPPPFAPKPTYTPPTKP 205


>At5g22560.1 68418.m02635 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 517

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 400 KVARESHKRSYTPPVQSKITHTPPASPRRRNPLPLPYT 513
           KV RE+   S  PP+++K    PP  P    P P P T
Sbjct: 291 KVQRET---STPPPIETKTPPLPPPPPTLTQPHPKPLT 325


>At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-related
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 330

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 433 TPPVQSKITHTPPASPRRRNPLPLPYTA 516
           T PV + +T  PP  P    P+P+P  A
Sbjct: 95  TNPVTNPVTQYPPTQPSGTVPVPVPVVA 122


>At4g03640.1 68417.m00499 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 394

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 495 WITTPRRSRWRVSNLALHWWR 433
           W++ P ++ WR+    LH WR
Sbjct: 37  WLSPPYKNAWRIQVKLLHVWR 57


>At1g52580.1 68414.m05936 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 309

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 436 PPVQSKITH--TPPASPRRRNPLPLPYTA 516
           PP+   I +   PPA P  R P+P+P+ A
Sbjct: 5   PPIPPDIENGPPPPARPHFRPPIPVPWVA 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,667
Number of Sequences: 28952
Number of extensions: 224590
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)