Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0560
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C1X8 Cluster: Chromosome undetermined scaffold_143, w...    36   1.1  
UniRef50_A0CZY9 Cluster: Chromosome undetermined scaffold_32, wh...    33   4.4  

>UniRef50_A0C1X8 Cluster: Chromosome undetermined scaffold_143, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_143, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1539

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 25/70 (35%), Positives = 38/70 (54%)
 Frame = +2

Query: 233  IFLNSFQTSILFTS*SRSIF*MNYICRVITKLEFIYNEIVYQTSKQRDDRERLSPQLSFI 412
            I+LN F  +IL  +  ++   +NYI + IT  + I N+I  +   Q +  E+L   LSF 
Sbjct: 1113 IYLNQFNVNILGVTPHQTFQYINYI-KFITIFDDISNQIQSEFINQMETTEKLWVFLSFP 1171

Query: 413  LQ*TSNIFLL 442
             Q  S +FLL
Sbjct: 1172 TQLISTLFLL 1181


>UniRef50_A0CZY9 Cluster: Chromosome undetermined scaffold_32, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_32,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1796

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 18/75 (24%), Positives = 38/75 (50%)
 Frame = +2

Query: 134 EIVIVQETTFRLKYGNKCLFMIES*K*IAI*TQIFLNSFQTSILFTS*SRSIF*MNYICR 313
           +I+ V+  T  + YG+ CL  I      ++  ++ L       ++T+ S +I    Y+C+
Sbjct: 681 DILQVESNTDHISYGSYCLLSIFLTINCSVNLKLLLLDVSDKSMYTNLSDTINLFEYVCK 740

Query: 314 VITKLEFIYNEIVYQ 358
              +L+ I+N+  +Q
Sbjct: 741 KRNQLQLIFNQEYFQ 755


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 482,175,886
Number of Sequences: 1657284
Number of extensions: 8284527
Number of successful extensions: 14326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14322
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)