Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0559
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    42   4e-06
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   4.9  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   6.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   8.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   8.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 41.9 bits (94), Expect = 4e-06
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 256  PRIVVSYS-TYVDNIGNRVVLPCRVKGHPKPKITWFNGQNVPIEKNPRMKVLRSGELVIS 432
            P  + S+  T+       V LPC   G P P ITW   + V    + +++    G L I 
Sbjct: 1306 PAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVITW-KIKGVQFTTSDKIRQQPDGSLFIR 1364

Query: 433  SLLWSDMDEYTCQAENAFGSE 495
             +  ++  EY+C  EN +G +
Sbjct: 1365 DVSRNNAGEYSCHVENDYGQD 1385



 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +1

Query: 298 GNRVVLPCRVKGHPKPKITW-FNGQNVPIEKNPRMKVLRSGELVISSL-LWSDMDEYTCQ 471
           G  +++ C   GHP   + W  +G+ +PI  N + KV  +G L+I ++   SD   Y C 
Sbjct: 525 GGTLIVHCPFAGHPVDSVVWERDGRQLPI--NRKQKVFINGTLIIENVERASDQATYDCV 582

Query: 472 AENAFG 489
           A+N+ G
Sbjct: 583 AKNSQG 588



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
 Frame = +1

Query: 307 VVLPCRVKGHPKPKITWF-----NGQNVPIEKNPRMKVLRSGELVISSLLWSDMDEYTCQ 471
           V L C  +G P P   W+       +   +  N R+K + +G L+I      D  +Y C 
Sbjct: 250 VALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQV-AGTLIIREAKVEDSGKYLCV 308

Query: 472 AENAFGSEKAKTSSTPLNP 528
             N+ G E  +T  T   P
Sbjct: 309 VNNSVGGESVETVLTVTAP 327



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 298 GNRVVLPCRVKGHPKPKITWFNGQNV-PIE------KNPRMKVLRSGELVISSLLWSDMD 456
           G+   + C+  G P+P +TW     V P +       NP +KV   G L I+++  ++  
Sbjct: 713 GSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIKV-EDGTLTINNIQKTNEG 771

Query: 457 EYTCQAENAFGS 492
            Y C+A N  GS
Sbjct: 772 YYLCEAVNGIGS 783



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = +1

Query: 241  AVPAEPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITWFNGQNVPIEKNP------RMK 402
            +V A P+  +         G+  VL C  KG     I W N  N  +E         R +
Sbjct: 792  SVQAPPQFDIKLRNQTSRRGDPAVLQCEAKGEKPIGILW-NINNKRLEPKGDNRYTIREE 850

Query: 403  VLRSGELV---ISSLLWSDMDEYTCQAENAFGSE 495
            +L +G L    I     SD   +TC A NAFGS+
Sbjct: 851  ILANGVLSGLSIKRTERSDSALFTCVATNAFGSD 884



 Score = 32.7 bits (71), Expect = 0.003
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
 Frame = +1

Query: 310 VLPCRVKGHPKPKITWFNGQNVPIEKNPRMK-VLRSGELVISSLLWSDMDE------YTC 468
           V+ C   G+P P I W       +   P ++ VL +G LV       D  +      Y C
Sbjct: 42  VVECSAHGNPTPDIIWVRSDGTAVGDVPGLRQVLANGNLVFPPFRAEDYRQEVHAQVYVC 101

Query: 469 QAENAFGS 492
            A+N+ GS
Sbjct: 102 LAKNSVGS 109



 Score = 32.3 bits (70), Expect = 0.003
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
 Frame = +1

Query: 256 PRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW-FNGQNVP-IEKNP-RMKVLRSGELV 426
           P+I  +++      GN V L C   G+P P+ITW   G+ +   E+N     V  +G++V
Sbjct: 414 PQIRHAFNEETVQPGNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVV 473

Query: 427 ----ISSLLWSDMDEYTCQAENAFGS 492
               I+++  +D   Y C A +  GS
Sbjct: 474 SHLNITAIHTNDGGLYRCVASSKVGS 499


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 277 STYVDNIGNRVVLPCRVKGHPKPKI 351
           S Y++NI +R VLP    G+ +P I
Sbjct: 18  SGYLENIRDRRVLPTVEPGYLRPLI 42


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 83  PTSIARISSTLI 118
           PTS+ +ISSTL+
Sbjct: 75  PTSVTKISSTLL 86


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +3

Query: 396 HEGASLGRAGHILPPLERHGRVHLPSRKRF 485
           H+GA +G    +  P   H   H+P    F
Sbjct: 33  HQGAQMGPEQQMWEPQMWHHHSHMPPHSVF 62


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +3

Query: 396 HEGASLGRAGHILPPLERHGRVHLPSRKRF 485
           H+GA +G    +  P   H   H+P    F
Sbjct: 33  HQGAQMGPEQQMWEPQMWHHHSHMPPHSVF 62


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 212 YLYCRPQCWLAQSWSSW 162
           Y+ C     LAQ W++W
Sbjct: 273 YIACSTPFILAQLWATW 289


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 279 HLRGQHRQQGGAPVP 323
           H +G H QQ   P+P
Sbjct: 100 HEKGMHDQQNNNPLP 114


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 118 SDAYDLSGCVHLPRH 162
           S AYD S C + P H
Sbjct: 341 SSAYDASSCGYDPMH 355


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,753
Number of Sequences: 336
Number of extensions: 2719
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)