Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0559
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.0  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.9  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   9.1  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = +2

Query: 59   SNELIDSSPTSIARISSTLIVTRTTSQDVYTCLXXXXXXXXXXXXVVYNTDSATELSERA 238
            S+ ++ SS +S   +S+++ VT + +  V +              V   TDSAT  S  A
Sbjct: 877  SSSVVSSSLSSTTSLSTSIPVTSSVAPAVTST------GSETSSVVGSGTDSATSSSWTA 930

Query: 239  KLFPLSLASW--SPIAPTWTTSATGWCSRAASRDTPSPRSPGST 364
            +    ++ S   + + PT ++SA+ W S +    + +  + GS+
Sbjct: 931  ETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSS 974


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 203  NTDSATELSERAKLFPLSLASWSPIAPTWTTSAT 304
            N  + T L+     F  + + W P+   WT S T
Sbjct: 1663 NLSATTSLTLHCNAFNFAKSHWEPVIEPWTFSTT 1696


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 606 TNLSNRTSILSIHDAFGSSSFFLSSTRV*RGRRCFSL 496
           + LSN+ ++ S  D F SSS  L +  V RG  CF L
Sbjct: 81  STLSNKKTLKSQLDRFLSSSKKLHNDDVNRGDYCFLL 117


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 320 AASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 490
           A S D+P  +SPGS D+     R    R    +S   PP+  +T T  L++    +A
Sbjct: 203 AKSDDSPVVKSPGSNDKPSASPRISV-RSLGNSSVVRPPTRTST-TRPLSRVNVTNA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,584
Number of Sequences: 5004
Number of extensions: 45471
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)