Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0559
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0188 - 17691582-17692241 31 0.77
09_04_0164 + 15265878-15268701,15268782-15269200 30 1.3
01_06_0258 + 27950196-27950749,27953670-27954570 29 2.3
09_02_0001 - 2857651-2857923,2858089-2858283 29 3.1
01_06_1740 - 39575614-39576981 28 5.4
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 28 7.1
08_01_0821 + 7966587-7966832 28 7.1
07_03_1321 - 25794146-25794904 28 7.1
06_03_0416 + 20568087-20568702,20568767-20570313 28 7.1
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44... 28 7.1
01_07_0192 - 41888998-41890632 28 7.1
06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682 27 9.4
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 27 9.4
>06_03_0188 - 17691582-17692241
Length = 219
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 230 ERAKLFPLSLASWSPIA----PTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLK 385
+R +PL + W + P WTT+ T A+ R+T P P + + PL+
Sbjct: 14 QRYTTYPLPASPWVMTSLEKPPPWTTTTTTMAVPASPRETAFPTKPSNANVSSPLR 69
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 2 GTRVHWFKNDSPVYEYDVESNELIDSSPTSI 94
G W N + +Y DVE+N L D PTSI
Sbjct: 302 GRLPRWLANCTILYLLDVENNSLADDLPTSI 332
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 311 CSRAASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSA 490
C RAA+ + SPR+ S P R R +W+ P S AT +L P +L+A
Sbjct: 115 CHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESL--PFSLAA 172
>09_02_0001 - 2857651-2857923,2858089-2858283
Length = 155
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 299 ATGWCSRAASRDTPSPRSPGSTDRMCP 379
ATGWCS + P R PG+ +R P
Sbjct: 98 ATGWCSASRRSLLPVVRHPGTIERPLP 124
>01_06_1740 - 39575614-39576981
Length = 455
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 376 PIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFG 489
P+ + PR VLRS LV+S + + D Y Q + G
Sbjct: 369 PLHEGPRGSVLRSVHLVVSEVTMTQEDVYEWQNATSKG 406
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 305 GWCSRAASRD-----TPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLA 469
GW R S+ TPS S ++ CP+K+T+ FA A+ S S+ +T L+
Sbjct: 32 GWMIRCFSKRVGIQFTPSAASAAASASSCPVKKTQCPCSFAVAT-SISSSTCTHFTPQLS 90
Query: 470 KPKTLSARRRLK 505
LS++ + K
Sbjct: 91 SAHLLSSQLKEK 102
>08_01_0821 + 7966587-7966832
Length = 81
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 299 ATGWCSRAASRDTPSPRSPGSTDR 370
A GWC R+T S ++PG+ R
Sbjct: 10 AMGWCGAEEERETASRKAPGACPR 33
>07_03_1321 - 25794146-25794904
Length = 252
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +2
Query: 224 LSERAKLFPLSLASWSPIAPTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLKRTRA*R 403
LS LFP S S AP + RA+S + + D + L ++RA
Sbjct: 134 LSGEGVLFPSGSGSGSAAAPAFQAMM-----RASSSPATNTTTSLVLDALAMLAKSRAIA 188
Query: 404 CFARASWSYPPSSGA 448
A A+ + PPSSG+
Sbjct: 189 TAAAAAAAAPPSSGS 203
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 343 PKITWFNGQNVPIEKNPRMKVLRSGELVI----SSLLWS 447
P+I WF ++ P+ +N ++ G+LV+ +L+WS
Sbjct: 90 PEIVWFANRDHPVGENATVQFTELGDLVLYDADGTLVWS 128
>05_01_0062 +
440239-440325,441107-441183,441416-441643,441953-442176,
442250-442398,443102-443279,443348-443428,443523-443669,
443759-444483
Length = 631
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 390 VLFNGHILSVEPGDLGLGVSLDAAREHHPV 301
+ NG+ V+ GDLGL LD AR H +
Sbjct: 175 IFVNGNQGEVKIGDLGLATILDNARSAHSI 204
>01_07_0192 - 41888998-41890632
Length = 544
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -3
Query: 432 GYDQLARAKHLHARVLFNGHILSVEPGDLGLGVSLDAAREHHPVADVVHVGAIGDHDARL 253
GYD+L R +LHA + + P D + V+ DA P V G D+ A
Sbjct: 377 GYDELRRMHYLHAAISEAMRLYPPVPIDSRVAVAADAL----PDGTAVRAGWFADYSAYA 432
Query: 252 SG 247
G
Sbjct: 433 MG 434
>06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682
Length = 186
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +2
Query: 341 SPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRRLKH 508
SP P S+ R C +R R S PP++ A TS P + LKH
Sbjct: 22 SPSPPASSIRFCR-GGSRGGRAVVSLRASVPPAAAAATTSGSIAPAISLTEKALKH 76
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 503 LAFSEPKAFSAWQVYSS-MSLQRREDMTSSPERSTFMRGFFSMGTFCPLNQVILGLG 336
LA S PK AW + + REDM S+ +R+ + F + GT + LG+G
Sbjct: 317 LATSHPK-MDAWLGNRKRIIVMNREDMVSNEDRNAWASYFANQGTKVVYSNGQLGMG 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,926
Number of Sequences: 37544
Number of extensions: 350475
Number of successful extensions: 1196
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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