Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0559
(635 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 48 8e-08
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 48 8e-08
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 48 8e-08
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 40 2e-05
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 31 0.012
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 7.6
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 48.0 bits (109), Expect = 8e-08
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +1
Query: 307 VVLPCRVKGHPKPKITWFNGQNVPIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAF 486
V LPC G P P++TW + ++ + R++ L G L I + +D EY+C EN F
Sbjct: 1294 VKLPCLAVGVPAPEVTW-KVRGAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCYVENTF 1352
Query: 487 GSE 495
G +
Sbjct: 1353 GHD 1355
Score = 33.1 bits (72), Expect = 0.002
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Frame = +1
Query: 244 VPAEPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITWFN------GQNVPIE-KNPRMK 402
V PR ++ + G+ + C+ G PKP++TW G ++ NP +
Sbjct: 675 VNVPPRWILEPTDKAFAQGSDARVECKADGFPKPQVTWKKAAGDTPGDYTDLKLSNPDIS 734
Query: 403 VLRSGELVISSLLWSDMDEYTCQAENAFGS 492
V G L I+++ ++ Y C+A N G+
Sbjct: 735 V-EDGTLSINNIQKTNEGYYLCEAVNGIGA 763
Score = 33.1 bits (72), Expect = 0.002
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Frame = +1
Query: 241 AVPAEPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW-FNGQNVPIEKNPRM----KV 405
+V A P + G VL C +G I W N + + + + R ++
Sbjct: 772 SVQAPPHFEIKLKNQTARRGEPAVLQCEAQGEKPIGILWNMNNKRLDPKSDSRYTIREEI 831
Query: 406 LRSG---ELVISSLLWSDMDEYTCQAENAFGSE 495
L +G +L I SD +TC A NAFGS+
Sbjct: 832 LANGVLSDLSIKRTERSDSALFTCVATNAFGSD 864
Score = 32.7 bits (71), Expect = 0.003
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +1
Query: 298 GNRVVLPCRVKGHPKPKITWFNGQNVPIEKNPRMK-VLRSGELVISSLLWSDMDE----- 459
G V+ C+ +G+P+P I W + P ++ VL +G LV D +
Sbjct: 18 GTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGNLVFPPFRAEDYRQEVHAQ 77
Query: 460 -YTCQAENAFGS 492
Y+C A + GS
Sbjct: 78 VYSCLARSPAGS 89
Score = 28.3 bits (60), Expect = 0.066
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = +1
Query: 256 PRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW-FNGQNVPIEKNPRM--KVLRSGELV 426
P+I +++ G + L C G+P P+ITW +G+ + + ++ V +G++V
Sbjct: 394 PQIRQAFAEETLQPGPSMFLKCVASGNPTPEITWELDGKRLSNTERLQVGQYVTVNGDVV 453
Query: 427 ----ISSLLWSDMDEYTCQAENAFGS 492
ISS +D Y C A + GS
Sbjct: 454 SHLNISSTHTNDGGLYKCIAASKVGS 479
Score = 27.9 bits (59), Expect = 0.087
Identities = 36/133 (27%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Frame = +1
Query: 136 SGCVHLPRHHELQDCASQHCGLQYR*RY*ALGT-R*AVPAEPRIV-VSYSTYVDNIGNRV 309
+G + + + D A+ C + Y A GT V P I S++ N G
Sbjct: 542 NGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLPMNAGEFA 601
Query: 310 VLPCRVKGHPKP-KITW-FNGQNVPIEKNPRMKVL--RSGELVISSLLWSDMDEYTCQAE 477
L C V P I W + G+ + K + R L+IS + EY C AE
Sbjct: 602 NLQCIVPTGDLPLNIRWSYPGEEMGGSSGVLAKKVADRVSMLMISVITARHAGEYVCTAE 661
Query: 478 NAFGSEKAKTSST 516
NA G+ T+ T
Sbjct: 662 NAAGTASHSTTLT 674
Score = 24.6 bits (51), Expect = 0.81
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 277 STYVDNIGNRVVLPCRVKGHPKPKITWF-NGQNVPIEKNPRMKVLRSGELVISSLLWSDM 453
ST + G C V+G+P ++W +G+ + +E+ VLR I S+ D
Sbjct: 315 STQTIDFGRPATFTCNVRGNPIKTVSWLKDGKPLGLEE----AVLR-----IESVKKEDK 365
Query: 454 DEYTCQAENAFGSEKA 501
Y C N S +A
Sbjct: 366 GMYQCFVRNDQESAQA 381
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 48.0 bits (109), Expect = 8e-08
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 313 LPCRVKGHPKPKITWFNGQNVPI--EKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAF 486
L C G P + W+ GQ I + +++L SGEL++S+L D +YTCQ ENA
Sbjct: 1333 LACNAVGDPTRE--WYKGQGEQIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQ 1390
Query: 487 GSEK 498
G++K
Sbjct: 1391 GNDK 1394
Score = 39.9 bits (89), Expect = 2e-05
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Frame = +1
Query: 244 VPAEPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITWF------NGQNVPIEKNPRMKV 405
V PR +V + V L C+ +G P P I W +G+ + + K+
Sbjct: 706 VKVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKI 765
Query: 406 LRSGELVISSLLWSDMDEYTCQAENAFGSEKAKTSSTPLNPS 531
L +G L++ + Y CQA N GS K +N S
Sbjct: 766 LSNGTLLLQHVKEDREGFYLCQASNGIGSGIGKVVQLKVNSS 807
Score = 38.7 bits (86), Expect = 5e-05
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 298 GNRVVLPCRVKGHPKPKITWFNGQNVPIEKNPRMKVLRSGELVISSL-LWSDMDEYTCQA 474
G + L C V G+P +I W N + + R KVL G LVI+S+ D YTC A
Sbjct: 533 GETLRLKCPVAGYPIEEIKW-ERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSA 591
Query: 475 ENAFG 489
N G
Sbjct: 592 RNKQG 596
Score = 37.1 bits (82), Expect = 1e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 250 AEPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW-FNGQNVPIEKNPRM--KVLRSGE 420
A P ++ S+ G V L C G+P P++TW +G +P + V G+
Sbjct: 420 APPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGD 479
Query: 421 LV----ISSLLWSDMDEYTCQAENAFG 489
++ IS ++ D EY+C AEN G
Sbjct: 480 VISHVNISHVMVEDGGEYSCMAENRAG 506
Score = 36.3 bits (80), Expect = 2e-04
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +1
Query: 298 GNRVVLPCRVKGHPKPKITWFNGQNVPIEK--NPRMKVLRS-------GELVISSLLWSD 450
G+ L C V G +TW G + + N R+ V R +L ISS SD
Sbjct: 822 GDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASD 881
Query: 451 MDEYTCQAENAFGSEK 498
Y CQA N +G ++
Sbjct: 882 SGAYFCQASNLYGRDQ 897
Score = 29.1 bits (62), Expect = 0.038
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = +1
Query: 313 LPCRVKGHPKPKITWFNGQNVPIEKNPRM-KVLRSGELVI----SSLLWSDMDE--YTCQ 471
L C G P I W P+ P + +VLR+G LV+ ++ D+ Y C
Sbjct: 50 LDCTATGSPPLNIDWSTADGHPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDVHSAAYRCV 109
Query: 472 AENAFG 489
A N+ G
Sbjct: 110 ASNSVG 115
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 48.0 bits (109), Expect = 8e-08
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 313 LPCRVKGHPKPKITWFNGQNVPI--EKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAF 486
L C G P + W+ GQ I + +++L SGEL++S+L D +YTCQ ENA
Sbjct: 1329 LACNAVGDPTRE--WYKGQGEQIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQ 1386
Query: 487 GSEK 498
G++K
Sbjct: 1387 GNDK 1390
Score = 39.9 bits (89), Expect = 2e-05
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Frame = +1
Query: 235 R*AVPAEPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITWF------NGQNVPIEKNPR 396
R V PR +V + V L C+ +G P P I W +G+ + +
Sbjct: 699 RLVVHVPPRWIVEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAY 758
Query: 397 MKVLRSGELVISSLLWSDMDEYTCQAENAFGSEKAKTSSTPLNPS 531
K+L +G L++ + Y CQA N GS K +N S
Sbjct: 759 TKILSNGTLLLQHVKEDREGFYLCQASNGIGSGIGKVVQLKVNSS 803
Score = 38.7 bits (86), Expect = 5e-05
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 298 GNRVVLPCRVKGHPKPKITWFNGQNVPIEKNPRMKVLRSGELVISSL-LWSDMDEYTCQA 474
G + L C V G+P +I W N + + R KVL G LVI+S+ D YTC A
Sbjct: 533 GETLRLKCPVAGYPIEEIKW-ERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSA 591
Query: 475 ENAFG 489
N G
Sbjct: 592 RNKQG 596
Score = 37.1 bits (82), Expect = 1e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 250 AEPRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITW-FNGQNVPIEKNPRM--KVLRSGE 420
A P ++ S+ G V L C G+P P++TW +G +P + V G+
Sbjct: 420 APPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGD 479
Query: 421 LV----ISSLLWSDMDEYTCQAENAFG 489
++ IS ++ D EY+C AEN G
Sbjct: 480 VISHVNISHVMVEDGGEYSCMAENRAG 506
Score = 36.3 bits (80), Expect = 2e-04
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +1
Query: 298 GNRVVLPCRVKGHPKPKITWFNGQNVPIEK--NPRMKVLRS-------GELVISSLLWSD 450
G+ L C V G +TW G + + N R+ V R +L ISS SD
Sbjct: 818 GDTATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASD 877
Query: 451 MDEYTCQAENAFGSEK 498
Y CQA N +G ++
Sbjct: 878 SGAYFCQASNLYGRDQ 893
Score = 29.1 bits (62), Expect = 0.038
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = +1
Query: 313 LPCRVKGHPKPKITWFNGQNVPIEKNPRM-KVLRSGELVI----SSLLWSDMDE--YTCQ 471
L C G P I W P+ P + +VLR+G LV+ ++ D+ Y C
Sbjct: 50 LDCTATGSPPLNIDWSTADGHPVNDVPGVRRVLRNGTLVLLPFPAAAFRQDVHSAAYRCV 109
Query: 472 AENAFG 489
A N+ G
Sbjct: 110 ASNSVG 115
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 39.9 bits (89), Expect = 2e-05
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 295 IGNRVVLPCRVKGHPKPKITWF-NGQNVPIEKNPRMKVLRSGELVISSLLWSDMDEYTCQ 471
+G+ V + C V G P P + W NG ++ P ++V G L ++ + YTC
Sbjct: 324 VGDNVEIKCDVTGTPPPPLVWRRNGADLETLNEPEIRVFNDGSLYLTKVQLIHAGNYTCH 383
Query: 472 A 474
A
Sbjct: 384 A 384
Score = 35.1 bits (77), Expect = 6e-04
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 256 PRIVVSYSTYVDNIGNRVVLPCRVKGHPKPKITWF-NGQNVPIEKNPRMKVLRSG-ELVI 429
P + V+ + + C V G P P++ W N + + ++ + ++ +G +L+I
Sbjct: 402 PEVKVTPRFQAKRLKEEANIRCHVAGEPLPRVQWLKNDEALNHDQPDKYDLIGNGTKLII 461
Query: 430 SSLLWSDMDEYTCQAENAFG 489
++ ++D Y CQA + G
Sbjct: 462 KNVDYADTGAYMCQASSIGG 481
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 30.7 bits (66), Expect = 0.012
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = +1
Query: 295 IGNRVVLPCRVKGHPKPKITW-------FNGQNVPIEKNPRMKVLRSGELVISSLLWSDM 453
+G ++ C G P+P+ITW ++ + + + P ++ I D
Sbjct: 36 LGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQVHEWPVGNDTLKSKMEIDPATQKDA 95
Query: 454 DEYTCQAENAFGSEK 498
Y CQA+N + ++
Sbjct: 96 GYYECQADNQYAVDR 110
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/42 (21%), Positives = 15/42 (35%)
Frame = +3
Query: 288 GQHRQQGGAPVPRQGTPQAQDHLVQRTECAH*KEPAHEGASL 413
G H G +P + P + T H ++P H +
Sbjct: 282 GHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDI 323
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,576
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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