Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0559
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38560.1 68418.m04662 protein kinase family protein contains ...    31   0.48 
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    30   1.1  
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi...    29   3.4  
At3g51630.1 68416.m05662 protein kinase family protein contains ...    28   6.0  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    27   7.9  
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ...    27   7.9  

>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 30/78 (38%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 260 ASWSPIAPTWTTSATGWCSRAASRDTPSPR----SPGSTDRMCPLKRTRA*RCFARASWS 427
           AS SP APT TT+     S +   +TPSP     SP       P   T        A+ +
Sbjct: 121 ASPSPPAPT-TTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTPTTTTSPPPPPATSA 179

Query: 428 YPPSSGATWTSTLAKPKT 481
            PPSS  T  STLA P T
Sbjct: 180 SPPSSNPTDPSTLAPPPT 197


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 331 GHPKPKITWFNGQNVPIEKNPRMKVLRSGELVISSLLWSDMDEYTCQAENAFGSE 495
           GH  P++T  + +  PIE+N   + + S      S+L  D+DE +  +EN FG +
Sbjct: 672 GHTSPEVTCSDPRTQPIERNESCESVFSS---ARSVLSDDVDELS-NSENDFGDD 722


>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 634

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 212 SATELSERAKLFPLSLASWSPIAPTWTTSATGWCSRA 322
           S TEL +  ++       W      W + A GWC+RA
Sbjct: 183 SVTELEKEYEIRGCGRKDWIDKRGDWRSKAYGWCARA 219


>At3g51630.1 68416.m05662 protein kinase family protein contains
           Pfam profile: PF00069 protein kinase domain
          Length = 549

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 390 VLFNGHILSVEPGDLGLGVSLDAAREHHPV 301
           +  NGH+  V+ GDLGL   L  ++  H V
Sbjct: 159 IFVNGHLGQVKIGDLGLAAILRGSQNAHSV 188


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 121 DAYDLSGCVHLPRHHELQD 177
           D YDL G V +P+HH+  D
Sbjct: 388 DKYDLYGQVAMPKHHQQSD 406


>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 286

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 291 QHRQQGGAPVPRQGTPQAQDHLVQRTECAH*KEPAHEGA 407
           QH+QQ   P    G+P+++   V  T     K+P   GA
Sbjct: 220 QHQQQNHHPYMNSGSPKSESSAVSTTTKTKKKKPGFFGA 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,215
Number of Sequences: 28952
Number of extensions: 253739
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)